Package: similaRpeak 1.44.0
Astrid Deschênes
similaRpeak: Metrics to estimate a level of similarity between two ChIP-Seq profiles
This package calculates metrics which quantify the level of similarity between ChIP-Seq profiles. More specifically, the package implements six pseudometrics specialized in pattern similarity detection in ChIP-Seq profiles.
Authors:
similaRpeak_1.44.0.tar.gz
similaRpeak_1.44.0.zip(r-4.7)similaRpeak_1.44.0.zip(r-4.6)similaRpeak_1.44.0.zip(r-4.5)
similaRpeak_1.44.0.tgz(r-4.6-any)similaRpeak_1.44.0.tgz(r-4.5-any)
similaRpeak_1.44.0.tar.gz(r-4.7-any)similaRpeak_1.44.0.tar.gz(r-4.6-any)
similaRpeak_1.44.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
similaRpeak/json (API)
NEWS
| # Install 'similaRpeak' in R: |
| install.packages('similaRpeak', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/adeschen/similarpeak/issues
- chr7Profiles - ChIP-Seq profiles of region chr7:61968807-61969730 related to enhancers H3K27ac and H3K4me1
- demoProfiles - ChIP-Seq profiles of region chr7:61968807-61969730 related to enhancers H3K27ac and H3K4me1
On BioConductor:similaRpeak-1.45.0(bioc 3.24)similaRpeak-1.44.0(bioc 3.23)
biologicalquestionchipseqgeneticsmultiplecomparisondifferentialexpressionbioconductorbioconductor-packagechip-profileschip-seqmetrics
Last updated from:49e418ce93 (on RELEASE_3_23). Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 157 | ||
| linux-devel-x86_64 | NOTE | 209 | ||
| source / vignettes | OK | 221 | ||
| linux-release-x86_64 | NOTE | 167 | ||
| macos-release-arm64 | NOTE | 117 | ||
| macos-oldrel-arm64 | NOTE | 83 | ||
| windows-devel | NOTE | 90 | ||
| windows-release | NOTE | 97 | ||
| windows-oldrel | NOTE | 98 | ||
| wasm-release | OK | 127 |
Exports:MetricFactorysimilarity
Dependencies:R6
