Package: sketchR 1.8.0

Charlotte Soneson

sketchR: An R interface for python subsampling/sketching algorithms

Provides an R interface for various subsampling algorithms implemented in python packages. Currently, interfaces to the geosketch and scSampler python packages are implemented. In addition it also provides diagnostic plots to evaluate the subsampling.

Authors:Charlotte Soneson [aut, cre], Michael Stadler [aut], Friedrich Miescher Institute for Biomedical Research [cph]

sketchR_1.8.0.tar.gz
sketchR_1.8.0.zip(r-4.7)sketchR_1.8.0.zip(r-4.6)sketchR_1.8.0.zip(r-4.5)
sketchR_1.8.0.tgz(r-4.6-any)sketchR_1.8.0.tgz(r-4.5-any)
sketchR_1.8.0.tar.gz(r-4.7-any)sketchR_1.8.0.tar.gz(r-4.6-any)
sketchR_1.8.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
sketchR/json (API)
NEWS

# Install 'sketchR' in R:
install.packages('sketchR', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/fmicompbio/sketchr/issues

On BioConductor:sketchR-1.9.1(bioc 3.24)sketchR-1.8.0(bioc 3.23)

singlecell

5.48 score 3 stars 9 scripts 231 downloads 6 exports 49 dependencies

Last updated from:55176fc149 (on RELEASE_3_23). Checks:8 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE297
linux-devel-x86_64NOTE1217
source / vignettesOK1336
linux-release-x86_64NOTE1245
macos-release-arm64NOTE602
macos-oldrel-arm64NOTE666
windows-develNOTE806
windows-releaseNOTE713
windows-oldrelNOTE709
wasm-releaseOK221

Exports:compareCompositionPlotgeosketchgetGeosketchNamesgetScSamplerNameshausdorffDistPlotscsampler

Dependencies:abindbasiliskBiobaseBiocGenericsclicpp11DelayedArraydir.expirydplyrfarverfilelockgenericsggplot2gluegtablehereIRangesisobandjsonlitelabelinglatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatspillarpkgconfigpngR6rappdirsRColorBrewerRcppRcppTOMLreticulaterlangrprojrootS4ArraysS4VectorsS7scalesSparseArraytibbletidyselectutf8vctrsviridisLitewithrXVector

Incorporating sketching into a typical single-cell analysis workflow

Rendered fromsketching_workflows.Rmdusingknitr::rmarkdownon Jun 02 2026.

Last update: 2025-08-12
Started: 2025-08-12

Subsampling single-cell data sets with sketchR

Rendered fromsketchR.Rmdusingknitr::rmarkdownon Jun 02 2026.

Last update: 2025-08-12
Started: 2022-01-20