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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "smartid" in publications use:'
type: software
license: MIT
title: 'smartid: Scoring and Marker Selection Method Based on Modified TF-IDF'
version: 1.8.0
doi: 10.1101/2025.11.10.687759
identifiers:
- type: doi
  value: 10.32614/CRAN.package.smartid
abstract: This package enables automated selection of group specific signature, especially
  for rare population. The package is developed for generating specifc lists of signature
  genes based on Term Frequency-Inverse Document Frequency (TF-IDF) modified methods.
  It can also be used as a new gene-set scoring method or data transformation method.
  Multiple visualization functions are implemented in this package.
authors:
- family-names: Chen
  given-names: Jinjin
  email: chen.j@wehi.edu.au
  orcid: https://orcid.org/0000-0001-7923-5723
preferred-citation:
  type: article
  title: Improved marker detection for rare population in single-cell transcriptomics
    through text mining-inspired scoring approach
  authors:
  - family-names: Chen
    given-names: Jinjin
    email: chen.j@wehi.edu.au
    orcid: https://orcid.org/0000-0001-7923-5723
  - family-names: Li
    given-names: Mengbo
  - family-names: Bhuva
    given-names: Dharmesh D.
  - family-names: Davis
    given-names: Melissa J.
  - family-names: Papenfuss
    given-names: Anthony T.
  - family-names: Tan
    given-names: Chin Wee
  year: '2025'
  journal: bioRxiv
  doi: 10.1101/2025.11.10.687759
  url: https://doi.org/10.1101/2025.11.10.687759
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/DavisLaboratory/smartid
commit: f8a5a8772113f604aa74893aa4d2f234672ca7af
url: https://davislaboratory.github.io/smartid
date-released: '2026-04-28'
contact:
- family-names: Chen
  given-names: Jinjin
  email: chen.j@wehi.edu.au
  orcid: https://orcid.org/0000-0001-7923-5723
references:
- type: manual
  title: 'smartid: Scoring and Marker Selection Method Based on Modified TF-IDF'
  authors:
  - family-names: Chen
    given-names: Jinjin
  year: '2026'
  url: https://bioconductor.org/packages/smartid
  notes: https://github.com/DavisLaboratory/smartid/smartid - R package version 1.8.0
  doi: 10.18129/B9.bioc.smartid