Package: smokingMouse 1.10.0
smokingMouse: Provides access to smokingMouse project data
This is an ExperimentHub package that provides access to the data generated and analyzed in the [smoking-nicotine-mouse](https://github.com/LieberInstitute/smoking-nicotine-mouse/) LIBD project. The datasets contain the expression data of mouse genes, transcripts, exons, and exon-exon junctions across 208 samples from pup and adult mouse brain, and adult blood, that were exposed to nicotine, cigarette smoke, or controls. They also contain relevant metadata of these samples and gene expression features, such QC metrics, if they were used after filtering steps and also if the features were differently expressed in the different experiments.
Authors:
smokingMouse_1.10.0.tar.gz
smokingMouse_1.10.0.tar.gz(r-4.7-any)smokingMouse_1.10.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
smokingMouse/json (API)
| # Install 'smokingMouse' in R: |
| install.packages('smokingMouse', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/lieberinstitute/smokingmouse/issues
On BioConductor:smokingMouse-1.11.0(data/experiment 3.24)smokingMouse-1.10.0(data/experiment 3.23)
experimenthubexpressiondatamus_musculus_datarnaseqdatadatapkg
Last updated from:a49ea73d70 (on RELEASE_3_23). Checks:1 WARNING, 2 NOTE, 1 OK. Indexed: no.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 135 | ||
| linux-devel | NOTE | 205 | ||
| source / vignettes | OK | 207 | ||
| linux-release | NOTE | 208 |
Exports:
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Get access to the smoking-nicotine-mouse LIBD project data | smokingMouse-package smoking-nicotine-mouse |
