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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "smoppix" in publications use:'
type: software
license: GPL-2.0-only
title: 'smoppix: Analyze Single Molecule Spatial Omics Data Using the Probabilistic
  Index'
version: 1.4.0
doi: 10.1101/2025.05.20.654270
identifiers:
- type: doi
  value: 10.32614/CRAN.package.smoppix
abstract: Test for univariate and bivariate spatial patterns in spatial omics data
  with single-molecule resolution. The tests implemented allow for analysis of nested
  designs and are automatically calibrated to different biological specimens. Tests
  for aggregation, colocalization, gradients and vicinity to cell edge or centroid
  are provided.
authors:
- family-names: Hawinkel
  given-names: Stijn
  email: stijn.hawinkel@psb.ugent.be
  orcid: https://orcid.org/0000-0002-4501-5180
preferred-citation:
  type: article
  title: Unified nonparametric analysis of single-molecule spatial omics data using
    probabilistic indices
  authors:
  - family-names: Hawinkel
    given-names: Stijn
    email: stijn.hawinkel@psb.ugent.be
    orcid: https://orcid.org/0000-0002-4501-5180
  - family-names: Yang
    given-names: Xilan
  - family-names: Poelmans
    given-names: Ward
  - family-names: Motte
    given-names: Hans
  - family-names: Beeckman
    given-names: Tom
  - family-names: Maere
    given-names: Steven
  journal: bioRxiv
  year: '2025'
  publisher:
    name: Cold Spring Harbor Laboratory
  doi: 10.1101/2025.05.20.654270
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/sthawinke/smoppix
commit: 0d59c517ca06ac38a7a4903800a4b083d95f0f55
url: https://github.com/sthawinke/smoppix
date-released: '2026-04-28'
contact:
- family-names: Hawinkel
  given-names: Stijn
  email: stijn.hawinkel@psb.ugent.be
  orcid: https://orcid.org/0000-0002-4501-5180