# ------------------------------------------------
# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# ------------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "spatialLIBD" in publications use:'
type: software
license: Artistic-2.0
title: 'spatialLIBD: spatialLIBD: an R/Bioconductor package to visualize spatially-resolved
  transcriptomics data'
version: 1.24.0
doi: 10.1186/s12864-022-08601-w
identifiers:
- type: doi
  value: 10.32614/CRAN.package.spatialLIBD
abstract: Inspect interactively the spatially-resolved transcriptomics data from the
  10x Genomics Visium platform as well as data from the Maynard, Collado-Torres et
  al, Nature Neuroscience, 2021 project analyzed by Lieber Institute for Brain Development
  (LIBD) researchers and collaborators.
authors:
- family-names: Collado-Torres
  given-names: Leonardo
  email: lcolladotor@gmail.com
  orcid: https://orcid.org/0000-0003-2140-308X
preferred-citation:
  type: article
  title: 'spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics
    data'
  authors:
  - family-names: Pardo
    given-names: Brenda
  - family-names: Spangler
    given-names: Abby
  - family-names: Weber
    given-names: Lukas M.
  - family-names: Hicks
    given-names: Stephanie C.
  - family-names: Jaffe
    given-names: Andrew E.
  - family-names: Martinowich
    given-names: Keri
  - family-names: Maynard
    given-names: Kristen R.
  - family-names: Collado-Torres
    given-names: Leonardo
    email: lcolladotor@gmail.com
    orcid: https://orcid.org/0000-0003-2140-308X
  year: '2022'
  journal: BMC Genomics
  doi: 10.1186/s12864-022-08601-w
  url: https://doi.org/10.1186/s12864-022-08601-w
repository: https://bioconductor.org/
repository-code: https://github.com/LieberInstitute/spatialLIBD
commit: c9e01b22a3551d93e9004c9d62a4256c414be6b3
url: https://support.bioconductor.org/tag/spatialLIBD
date-released: '2026-01-09'
contact:
- family-names: Collado-Torres
  given-names: Leonardo
  email: lcolladotor@gmail.com
  orcid: https://orcid.org/0000-0003-2140-308X
references:
- type: article
  title: Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal
    cortex
  authors:
  - family-names: Maynard
    given-names: Kristen R.
  - family-names: Collado-Torres
    given-names: Leonardo
  - family-names: Weber
    given-names: Lukas M.
  - family-names: Uytingco
    given-names: Cedric
  - family-names: Barry
    given-names: Brianna K.
  - family-names: Williams
    given-names: Stephen R.
  - family-names: II
    given-names: Joseph L. Catallini
  - family-names: Tran
    given-names: Matthew N.
  - family-names: Besich
    given-names: Zachary
  - family-names: Tippani
    given-names: Madhavi
  - family-names: Chew
    given-names: Jennifer
  - family-names: Yin
    given-names: Yifeng
  - family-names: Kleinman
    given-names: Joel E.
  - family-names: Hyde
    given-names: Thomas M.
  - family-names: Rao
    given-names: Nikhil
  - family-names: Hicks
    given-names: Stephanie C.
  - family-names: Martinowich
    given-names: Keri
  - family-names: Jaffe
    given-names: Andrew E.
  year: '2021'
  journal: Nature Neuroscience
  doi: 10.1038/s41593-020-00787-0
  url: https://www.nature.com/articles/s41593-020-00787-0
- type: article
  title: A data-driven single-cell and spatial transcriptomic map of the human prefrontal
    cortex
  authors:
  - family-names: Huuki-Myers
    given-names: Louise A.
  - family-names: Spangler
    given-names: Abby
  - family-names: Eagles
    given-names: Nicholas J.
  - family-names: Montgomergy
    given-names: Kelsey D.
  - family-names: Kwon
    given-names: Sang Ho
  - family-names: Guo
    given-names: Boyi
  - family-names: Grant-Peters
    given-names: Melissa
  - family-names: Divecha
    given-names: Heena R.
  - family-names: Tippani
    given-names: Madhavi
  - family-names: Sriworarat
    given-names: Chaichontat
  - family-names: Nguyen
    given-names: Annie B.
  - family-names: Ravichandran
    given-names: Prashanthi
  - family-names: Tran
    given-names: Matthew N.
  - family-names: Seyedian
    given-names: Arta
  - family-names: Consortium
    given-names: PsychENCODE
  - family-names: Hyde
    given-names: Thomas M.
  - family-names: Kleinman
    given-names: Joel E.
  - family-names: Battle
    given-names: Alexis
  - family-names: Page
    given-names: Stephanie C.
  - family-names: Ryten
    given-names: Mina
  - family-names: Hicks
    given-names: Stephanie C.
  - family-names: Martinowich
    given-names: Keri
  - family-names: Collado-Torres
    given-names: Leonardo
  - family-names: Maynard
    given-names: Kristen R.
  year: '2024'
  journal: Science
  doi: 10.1126/science.adh1938
  url: https://doi.org/10.1126/science.adh1938
- type: article
  title: Influence of Alzheimer’s disease related neuropathology on local microenvironment
    gene expression in the human inferior temporal cortex
  authors:
  - family-names: Kwon
    given-names: Sang Ho
  - family-names: Parthiban
    given-names: Sowmya
  - family-names: Tippani
    given-names: Madhavi
  - family-names: Divecha
    given-names: Heena R.
  - family-names: Eagles
    given-names: Nicholas J.
  - family-names: Lobana
    given-names: Jashandeep S.
  - family-names: Williams
    given-names: Stephen R.
  - family-names: Mark
    given-names: Michelle
  - family-names: Bharadwaj
    given-names: Rahul A.
  - family-names: Kleinman
    given-names: Joel E.
  - family-names: Hyde
    given-names: Thomas M.
  - family-names: Page
    given-names: Stephanie C.
  - family-names: Hicks
    given-names: Stephanie C.
  - family-names: Martinowich
    given-names: Keri
  - family-names: Maynard
    given-names: Kristen R.
  - family-names: Collado-Torres
    given-names: Leonardo
  year: '2023'
  journal: GEN Biotechnology
  doi: 10.1089/genbio.2023.0019
  url: https://doi.org/10.1089/genbio.2023.0019