To cite spatzie in publications use:

spatzie: An R package for identifying significant transcription factor motif co-enrichment from enhancer-promoter interactions Jennifer Hammelman, Konstantin Krismer, David K. Gifford Nucleic Acids Research, 2022, gkac036; DOI: https://doi.org/10.1093/nar/gkac036

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Corresponding BibTeX entry:

  @Article{,
    title = {spatzie: An R package for identifying significant
      transcription factor motif co-enrichment from enhancer-promoter
      interactions},
    author = {Jennifer Hammelman and Konstanin Krismer and David K.
      Gifford},
    journal = {Nucleic Acids Research},
    pages = {gkac036},
    year = {2022},
    month = {1},
    doi = {10.1093/nar/gkac036},
    url = {https://doi.org/10.1093/nar/gkac036},
    publisher = {Oxford University Press},
  }