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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "specL" in publications use:'
type: software
license: GPL-3.0-only
title: 'specL: specL - Prepare Peptide Spectrum Matches for Use in Targeted Proteomics'
version: 1.46.0
doi: 10.1093/bioinformatics/btv105
identifiers:
- type: doi
  value: 10.32614/CRAN.package.specL
abstract: provides a functions for generating spectra libraries that can be used for
  MRM SRM MS workflows in proteomics. The package provides a BiblioSpec reader, a
  function which can add the protein information using a FASTA formatted amino acid
  file, and an export method for using the created library in the Spectronaut software.
  The package is developed, tested and used at the Functional Genomics Center Zurich
  <https://fgcz.ch>.
authors:
- family-names: Panse
  given-names: Christian
  email: cp@fgcz.ethz.ch
  orcid: https://orcid.org/0000-0003-1975-3064
- family-names: Grossmann
  given-names: Jonas
  email: jg@fgcz.ethz.ch
  orcid: https://orcid.org/0000-0002-6899-9020
- family-names: Trachsel
  given-names: Christian
preferred-citation:
  type: article
  title: specL - An R/Bioconductor package to prepare peptide spectrum matches for
    use in targeted proteomics
  authors:
  - family-names: Panse
    given-names: Christian
    email: cp@fgcz.ethz.ch
    orcid: https://orcid.org/0000-0003-1975-3064
  - family-names: Trachsel
    given-names: Christian
  - family-names: Grossmann
    given-names: Jonas
    email: jg@fgcz.ethz.ch
    orcid: https://orcid.org/0000-0002-6899-9020
  - family-names: Schlapbach
    given-names: Ralph
  journal: Bioinformatics
  month: '2'
  year: '2015'
  notes: 'DOI:10.1093/bioinformatics/btv105, PMID: 25712692'
  url: http://dx.doi.org/10.1093/bioinformatics/btv105
  start: 2228-2231
  doi: 10.1093/bioinformatics/btv105
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/fgcz/specL
commit: 4a57dea043e2e60cc7cd04cbdf9a05fbb5dce8bc
url: http://bioconductor.org/packages/specL/
date-released: '2026-04-28'
contact:
- family-names: Panse
  given-names: Christian
  email: cp@fgcz.ethz.ch
  orcid: https://orcid.org/0000-0003-1975-3064