Package: spoon 1.8.0

Kinnary Shah

spoon: Address the Mean-variance Relationship in Spatial Transcriptomics Data

This package addresses the mean-variance relationship in spatially resolved transcriptomics data. Precision weights are generated for individual observations using Empirical Bayes techniques. These weights are used to rescale the data and covariates, which are then used as input in spatially variable gene detection tools.

Authors:Kinnary Shah [aut, cre], Boyi Guo [aut], Stephanie C. Hicks [aut]

spoon_1.8.0.tar.gz
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spoon_1.8.0.tgz(r-4.6-any)spoon_1.8.0.tgz(r-4.5-any)
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spoon_1.8.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
spoon/json (API)
NEWS

# Install 'spoon' in R:

install.packages('spoon', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kinnaryshah/spoon/issues

On BioConductor:spoon-1.9.0(bioc 3.24)spoon-1.8.0(bioc 3.23)

spatial singlecell transcriptomics geneexpression preprocessing

4.38 score 24 scripts 236 downloads 2 exports 75 dependencies

Last updated from:368bff4522 (on RELEASE_3_23). Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: no.

Target	Result	Time
bioc-checks	NOTE	206
linux-devel-x86_64	WARNING	489
source / vignettes	OK	348
linux-release-x86_64	WARNING	499
macos-release-arm64	WARNING	364
macos-oldrel-arm64	WARNING	308
windows-devel	WARNING	554
windows-release	WARNING	600
windows-oldrel	WARNING	512
wasm-release	OK	176