Package: ssviz 1.46.0

Diana Low

ssviz: A small RNA-seq visualizer and analysis toolkit

Small RNA sequencing viewer

Authors:Diana Low

ssviz_1.46.0.tar.gz
ssviz_1.46.0.zip(r-4.7)ssviz_1.46.0.zip(r-4.6)ssviz_1.46.0.zip(r-4.5)
ssviz_1.46.0.tgz(r-4.6-any)ssviz_1.46.0.tgz(r-4.5-any)
ssviz_1.46.0.tar.gz(r-4.7-any)ssviz_1.46.0.tar.gz(r-4.6-any)
ssviz_1.46.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
ssviz/json (API)
NEWS

# Install 'ssviz' in R:
install.packages('ssviz', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:ssviz-1.47.0(bioc 3.24)ssviz-1.46.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologysequencingrnaseqvisualizationmultiplecomparisongenetics

3.60 score 7 scripts 412 downloads 2 mentions 8 exports 40 dependencies

Last updated from:e420a0fe49 (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR162
linux-devel-x86_64NOTE229
source / vignettesOK208
linux-release-x86_64NOTE224
macos-release-arm64NOTE178
macos-oldrel-arm64NOTE131
windows-develNOTE162
windows-releaseNOTE153
windows-oldrelNOTE143
wasm-releaseOK143

Exports:getCountMatrixntfreqpingpongplotDistroplotFreqplotPPplotRegionreadBam

Dependencies:BHBiocGenericsBiocParallelBiostringsbitopsclicodetoolscpp11crayonfarverformatRfutile.loggerfutile.optionsgenericsGenomicRangesggplot2gluegtableIRangesisobandlabelinglambda.rlifecycleplyrR6RColorBrewerRcppreshapeRhtslibrlangRsamtoolsS4VectorsS7scalesSeqinfosnowvctrsviridisLitewithrXVector

ssviz

Rendered fromssviz.Rnwusingknitron May 30 2026.

Last update: 2018-08-30
Started: 2014-06-07

Readme and manuals

Help Manual

Help pageTopics
ssvizssviz-package ssviz
counts datacounts
ctrlbam datactrlbam
getCountMatrixgetCountMatrix
getCountMatrixgetCountMatrix,DataFrame-method getCountMatrix-methods
Class '"logicalORmissing"'logicalORmissing-class
ntfreqntfreq
ntfreqntfreq,DataFrame,numeric-method ntfreq-methods
pctrlbam datapctrlbam
pingpongpingpong
pingpongpingpong,DataFrame-method pingpong-methods
plotDistroplotDistro
plotDistroplotDistro,list-method plotDistro-methods
plotFreqplotFreq
plotFreqplotFreq,data.frame,logicalORmissing-method plotFreq-methods
plotPPplotPP
plotPPplotPP,list-method plotPP-methods
plotRegionplotRegion
plotRegionplotRegion,list,character-method plotRegion-methods
ptreatbam dataptreatbam
readBamreadBam
readBamreadBam,character-method readBam-methods
treatbam datatreatbam