Package: svaNUMT 1.18.0

Ruining Dong

svaNUMT: NUMT detection from structural variant calls

svaNUMT contains functions for detecting NUMT events from structural variant calls. It takes structural variant calls in GRanges of breakend notation and identifies NUMTs by nuclear-mitochondrial breakend junctions. The main function reports candidate NUMTs if there is a pair of valid insertion sites found on the nuclear genome within a certain distance threshold. The candidate NUMTs are reported by events.

Authors:Ruining Dong [aut, cre]

svaNUMT_1.18.0.tar.gz
svaNUMT_1.18.0.zip(r-4.7)svaNUMT_1.18.0.zip(r-4.6)svaNUMT_1.18.0.zip(r-4.5)
svaNUMT_1.18.0.tgz(r-4.6-any)svaNUMT_1.18.0.tgz(r-4.5-any)
svaNUMT_1.18.0.tar.gz(r-4.7-any)svaNUMT_1.18.0.tar.gz(r-4.6-any)
svaNUMT_1.18.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
svaNUMT/json (API)
NEWS

# Install 'svaNUMT' in R:

install.packages('svaNUMT', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/papenfusslab/svanumt/issues

On BioConductor:svaNUMT-1.19.0(bioc 3.24)svaNUMT-1.18.0(bioc 3.23)

dataimport sequencing annotation genetics variantannotation

5.50 score 3 stars 14 scripts 294 downloads 1 exports 82 dependencies

Last updated from:b00a0e5e4b (on RELEASE_3_23). Checks:8 NOTE, 2 OK. Indexed: no.

Target	Result	Time
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linux-devel-x86_64	NOTE	478
source / vignettes	OK	417
linux-release-x86_64	NOTE	451
macos-release-arm64	NOTE	291
macos-oldrel-arm64	NOTE	328
windows-devel	NOTE	366
windows-release	NOTE	639
windows-oldrel	NOTE	416
wasm-release	OK	260