Package: tRNAdbImport 1.30.0

Felix G.M. Ernst

tRNAdbImport: Importing from tRNAdb and mitotRNAdb as GRanges objects

tRNAdbImport imports the entries of the tRNAdb and mtRNAdb (http://trna.bioinf.uni-leipzig.de) as GRanges object.

Authors:Felix G.M. Ernst [aut, cre]

tRNAdbImport_1.30.0.tar.gz
tRNAdbImport_1.30.0.zip(r-4.7)tRNAdbImport_1.30.0.zip(r-4.6)tRNAdbImport_1.30.0.zip(r-4.5)
tRNAdbImport_1.30.0.tgz(r-4.6-any)tRNAdbImport_1.30.0.tgz(r-4.5-any)
tRNAdbImport_1.30.0.tar.gz(r-4.7-any)tRNAdbImport_1.30.0.tar.gz(r-4.6-any)
tRNAdbImport_1.30.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
tRNAdbImport/json (API)
NEWS

# Install 'tRNAdbImport' in R:
install.packages('tRNAdbImport', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/felixernst/trnadbimport/issues

On BioConductor:tRNAdbImport-1.31.0(bioc 3.24)tRNAdbImport-1.30.0(bioc 3.23)

softwarevisualizationdataimportbioconductorsequencesstructurestrnatrna-genestrna-sequencestrnadb

4.95 score 1 stars 1 packages 3 scripts 432 downloads 11 exports 39 dependencies

Last updated from:22d3091ed6 (on RELEASE_3_23). Checks:1 WARNING, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksWARNING183
linux-devel-x86_64OK282
source / vignettesOK233
linux-release-x86_64OK259
macos-release-arm64OK155
macos-oldrel-arm64OK126
windows-develOK168
windows-releaseOK152
windows-oldrelOK150
wasm-releaseOK144

Exports:import.mttRNAdbimport.mttRNAdb.idimport.tRNAdbimport.tRNAdb.blastimport.tRNAdb.idistRNAdbGRangesopen_mtdbIDopen_tdbIDTRNA_DB_URLTRNA_DB_URL_MTtRNAdb2GFF

Dependencies:askpassBiocGenericsBiostringsclicpp11crayoncurlfarvergenericsGenomicRangesggplot2gluegtablehttr2IRangesisobandlabelinglifecyclemagrittrModstringsopensslR6rappdirsRColorBrewerrlangS4VectorsS7scalesSeqinfostringistringrStructstringssystRNAvctrsviridisLitewithrxml2XVector

Importing from to tRNAdb and mitotRNAdb as GRanges

Felix G.M. Ernst

Rendered fromtRNAdbImport.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2024-01-13
Started: 2018-09-06

Readme and manuals

Help Manual

Help pageTopics
Importing information from the tRNA db as GRanges objectimport.mttRNAdb import.mttRNAdb.blast import.mttRNAdb.id import.tRNAdb import.tRNAdb.blast import.tRNAdb.id tRNAdb2GFF TRNA_DB_URL TRNA_DB_URL_MT
tRNAdb compatibility checkistRNAdbGRanges istRNAdbGRanges,GRanges-method
Open a tRNA db entry in a browseropen_mtdbID open_tdbID
tRNAdbImport: Importing from to tRNAdb and mitotRNAdb as GRangestRNAdbImport