Package: tanggle
Type: Package
Title: Visualization of Phylogenetic Networks
Version: 1.18.0
Authors@R: c(person("Klaus", "Schliep", email="klaus.schliep@gmail.com", 
    role = c("aut", "cre"), comment = c(ORCID = "0000-0003-2941-0161")),
             person("Marta", "Vidal-Garcia", role="aut"), 
             person("Claudia", "Solis-Lemus", role="aut", 
    email="solislemus@wisc.edu", comment = c(ORCID = "0000-0002-9789-8915")), 
             person("Leann", "Biancani", role="aut"), 
             person("Eren", "Ada", role="aut"), 
             person("L. Francisco", "Henao Diaz", role="aut"), 
             person("Guangchuang", "Yu", role = c("ctb")),
             person("Joshua", "Justison", role="aut"))
Description: Offers functions for plotting split (or implicit) networks
        (unrooted, undirected) and explicit networks (rooted, directed)
        with reticulations extending. 'ggtree' and using functions from
        'ape' and 'phangorn'. It extends the 'ggtree' package [@Yu2017]
        to allow the visualization of phylogenetic networks using the
        'ggplot2' syntax. It offers an alternative to the plot
        functions already available in 'ape' Paradis and Schliep (2019)
        <doi:10.1093/bioinformatics/bty633> and 'phangorn' Schliep
        (2011) <doi:10.1093/bioinformatics/btq706>.
Depends: R (>= 4.1), ggplot2 (>= 3.0.0), ggtree
Imports: ape (>= 5.0), phangorn (>= 2.12), rlang, utils, methods, dplyr
Suggests: tinytest, BiocStyle, ggimage, knitr, rmarkdown
VignetteBuilder: knitr
biocViews: Software, Visualization, Phylogenetics, Alignment,
        Clustering, MultipleSequenceAlignment, DataImport
License: Artistic-2.0
URL: https://klausvigo.github.io/tanggle/,
        https://github.com/KlausVigo/tanggle
BugReports: https://github.com/KlausVigo/tanggle/issues
Encoding: UTF-8
RoxygenNote: 7.3.3
Roxygen: list(old_usage = TRUE)
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:56:49 UTC
RemoteUrl: https://github.com/bioc/tanggle
RemoteRef: RELEASE_3_23
RemoteSha: 057845ac6d634010b3f8302e785e666642dfba43
NeedsCompilation: no
Packaged: 2026-07-04 11:44:42 UTC; root
Author: Klaus Schliep [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-2941-0161>),
  Marta Vidal-Garcia [aut],
  Claudia Solis-Lemus [aut] (ORCID:
    <https://orcid.org/0000-0002-9789-8915>),
  Leann Biancani [aut],
  Eren Ada [aut],
  L. Francisco Henao Diaz [aut],
  Guangchuang Yu [ctb],
  Joshua Justison [aut]
Maintainer: Klaus Schliep <klaus.schliep@gmail.com>