Package: tartare 1.26.0
tartare: Raw ground spectra recorded on Thermo Fisher Scientific mass spectrometers
Provides raw files recorded on different Liquid Chromatography Mass Spectrometry (LC-MS) instruments. All included MS instruments are manufactured by Thermo Fisher Scientific and belong to the Orbitrap Tribrid or Q Exactive Orbitrap family of instruments. Despite their common origin and shared hardware components, e.g., Orbitrap mass analyser, the above instruments tend to write data in different "dialects" in a shared binary file format (.raw). The intention behind tartare is to provide complex but slim real-world files that can be used to make code robust with respect to this diversity. In other words, it is intended for enhanced unit testing. The package is considered to be used with the rawrr package and the Spectra MsBackends.
Authors:
tartare_1.26.0.tar.gz
tartare_1.26.0.tar.gz(r-4.7-any)tartare_1.26.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
tartare/json (API)
| # Install 'tartare' in R: |
| install.packages('tartare', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/cpanse/tartare/issues
On BioConductor:tartare-1.27.0(data/experiment 3.24)tartare-1.26.0(data/experiment 3.23)
experimentdatamassspectrometrydataexperimenthubbioconductorblobdataunittestingdatapkg
Last updated from:954abf0d6c (on RELEASE_3_23). Checks:3 NOTE, 1 OK. Indexed: no.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 131 | ||
| linux-devel | NOTE | 248 | ||
| source / vignettes | OK | 217 | ||
| linux-release | NOTE | 266 |
Exports:getFilename
Dependencies:AnnotationDbiAnnotationHubaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrExperimentHubfastmapfilelockgenericsgluehttrhttr2IRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigpngpurrrR6rappdirsrlangRSQLiteS4VectorsSeqinfostringistringrsystibbletidyrtidyselectutf8vctrswithrXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| downloads files from aws storage and returns local filepath | getFilename tartare |
