# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "tidySummarizedExperiment" in publications use:'
type: software
license: GPL-3.0-only
title: 'tidySummarizedExperiment: Brings SummarizedExperiment to the Tidyverse'
version: 1.22.0
doi: 10.1038/s41592-024-02299-2
identifiers:
- type: doi
  value: 10.32614/CRAN.package.tidySummarizedExperiment
abstract: The tidySummarizedExperiment package provides a set of tools for creating
  and manipulating tidy data representations of SummarizedExperiment objects. SummarizedExperiment
  is a widely used data structure in bioinformatics for storing high-throughput genomic
  data, such as gene expression or DNA sequencing data. The tidySummarizedExperiment
  package introduces a tidy framework for working with SummarizedExperiment objects.
  It allows users to convert their data into a tidy format, where each observation
  is a row and each variable is a column. This tidy representation simplifies data
  manipulation, integration with other tidyverse packages, and enables seamless integration
  with the broader ecosystem of tidy tools for data analysis.
authors:
- family-names: Mangiola
  given-names: Stefano
  email: mangiolastefano@gmail.com
preferred-citation:
  type: article
  title: 'The tidyomics ecosystem: enhancing omic data analyses'
  authors:
  - family-names: Hutchison
    given-names: W.J.
  - family-names: Keyes
    given-names: T.J.
  - name: The tidyomics Consortium
  journal: Nature Methods
  year: '2024'
  volume: '21'
  doi: 10.1038/s41592-024-02299-2
  url: https://doi.org/10.1038/s41592-024-02299-2
  start: 1166-1170
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/stemangiola/tidySummarizedExperiment
commit: 8449153261ff4d843fc6f5f9b807dfd74bbe2db8
url: https://github.com/stemangiola/tidySummarizedExperiment
date-released: '2026-04-28'
contact:
- family-names: Mangiola
  given-names: Stefano
  email: mangiolastefano@gmail.com