Package: tidyomics 1.8.0

Stefano Mangiola

tidyomics: Easily install and load the tidyomics ecosystem

The tidyomics ecosystem is a set of packages for ’omic data analysis that work together in harmony; they share common data representations and API design, consistent with the tidyverse ecosystem. The tidyomics package is designed to make it easy to install and load core packages from the tidyomics ecosystem with a single command.

Authors:Stefano Mangiola [aut, cre], Michael Love [aut], William Hutchison [aut]

tidyomics_1.8.0.tar.gz
tidyomics_1.8.0.zip(r-4.7)tidyomics_1.8.0.zip(r-4.6)tidyomics_1.8.0.zip(r-4.5)
tidyomics_1.8.0.tgz(r-4.6-any)tidyomics_1.8.0.tgz(r-4.5-any)
tidyomics_1.8.0.tar.gz(r-4.7-any)tidyomics_1.8.0.tar.gz(r-4.6-any)
tidyomics_1.8.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
tidyomics/json (API)

# Install 'tidyomics' in R:
install.packages('tidyomics', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tidyomics/tidyomics/issues

On BioConductor:tidyomics-1.9.0(bioc 3.24)tidyomics-1.8.0(bioc 3.23)

assaydomaininfrastructurernaseqdifferentialexpressiongeneexpressionnormalizationclusteringqualitycontrolsequencingtranscriptiontranscriptomicscytometrygenomicstidyverse

6.86 score 75 stars 16 scripts 260 downloads 3 exports 195 dependencies

Last updated from:ad34d0855e (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR202
linux-devel-x86_64NOTE417
source / vignettesOK326
linux-release-x86_64NOTE419
macos-release-arm64NOTE198
macos-oldrel-arm64NOTE219
windows-develNOTE326
windows-releaseNOTE330
windows-oldrelNOTE271
wasm-releaseOK205

Exports:tidyomicstidyomics_conflictstidyomics_packages

Dependencies:abindaskpassbase64encBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobbslibcachemcaToolscigarillocliclustercodetoolscommonmarkcowplotcpp11crayoncrosstalkcurldata.tableDBIdbplyrDelayedArraydeldirdigestdotCall64dplyrdqrngellipsisevaluatefansifarverfastDummiesfastmapfilelockfitdistrplusFNNfontawesomeformatRfsfutile.loggerfutile.optionsfuturefuture.applygenericsGenomicAlignmentsGenomicRangesggplot2ggrepelggridgesglobalsgluegoftestgplotsgridExtragtablegtoolsherehighrhtmltoolshtmlwidgetshttpuvhttrhttr2icaigraphIRangesirlbaisobandjquerylibjsonliteKernSmoothknitrlabelinglambda.rlaterlatticelazyevallifecyclelistenvlmtestmagickmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimeminiUInlmeopensslotelparallellypatchworkpbapplypillarpkgconfigplotlyplyrplyrangesplyxppngpolyclipprogressrpromisespurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppProgressRcppTOMLRCurlreshape2restfulrreticulateRhtslibrjsonrlangrmarkdownROCRrprojrootRsamtoolsRSpectraRSQLitertracklayerRtsneS4ArraysS4VectorsS7sassscalesscattermoresctransformSeqinfoSeuratSeuratObjectshinySingleCellExperimentsitmosnowsourcetoolsspspamSparseArraySpatialExperimentspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstringistringrSummarizedExperimentsurvivalsystensortibbletidygatetidyrtidyselecttidyseurattidySingleCellExperimenttidySpatialExperimenttidySummarizedExperimenttinytexttserviceutf8uwotvctrsviridisviridisLitewithrxfunXMLxtableXVectoryamlzoo

Loading the tidyomics ecosystem

William Hutchison

Rendered fromloading-tidyomics.Rmdusingknitr::knitron Jun 03 2026.

Last update: 2025-10-26
Started: 2024-01-04