# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "tidysbml" in publications use:'
type: software
license: CC-BY-4.0
title: 'tidysbml: Extract SBML''s data into dataframes'
version: 1.6.0
doi: 10.1093/bioadv/vbae148
identifiers:
- type: doi
  value: 10.32614/CRAN.package.tidysbml
abstract: Starting from one SBML file, it extracts information from each listOfCompartments,
  listOfSpecies and listOfReactions element by saving them into data frames. Each
  table provides one row for each entity (i.e. either compartment, species, reaction
  or speciesReference) and one set of columns for the attributes, one column for the
  content of the 'notes' subelement and one set of columns for the content of the
  'annotation' subelement.
authors:
- family-names: Paparozzi
  given-names: Veronica
  email: veronicapaparozzi1@gmail.com
  orcid: https://orcid.org/0009-0000-2961-1559
- family-names: Nardini
  given-names: Christine
  email: christine.nardini@cnr.it
  orcid: https://orcid.org/0000-0001-7601-321X
preferred-citation:
  type: article
  title: 'tidysbml: R/Bioconductor package for SBML extraction into dataframes'
  authors:
  - family-names: Paparozzi
    given-names: Veronica
    email: veronicapaparozzi1@gmail.com
    orcid: https://orcid.org/0009-0000-2961-1559
  - family-names: Nardini
    given-names: Christine
    email: christine.nardini@cnr.it
    orcid: https://orcid.org/0000-0001-7601-321X
  journal: Bioinformatics Advances
  year: '2024'
  volume: '4'
  issue: '1'
  doi: 10.1093/bioadv/vbae148
  start: vbae148
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/veronicapaparozzi/tidysbml
commit: 17cdb8b3fe5dd1d7fd230d1e64d5cc65f4e67300
url: https://github.com/veronicapaparozzi/tidysbml
date-released: '2026-04-28'
contact:
- family-names: Paparozzi
  given-names: Veronica
  email: veronicapaparozzi1@gmail.com
  orcid: https://orcid.org/0009-0000-2961-1559