Package: timecoursedata 1.22.0
timecoursedata: A data package for timecourse RNA-seq and microarray gene expression data sets
This data package contains timecourse gene expression data sets. The first dataset, from Shoemaker et al, consists of microarray samples from lung tissue of mice exposed to different influenzy strains from 14 timepoints. The two other datasets are leaf and root samples from sorghum crops exposed to pre- and post-flowering drought stress and a control condition, sampled across the plants lifetime.
Authors:
timecoursedata_1.22.0.tar.gz
timecoursedata_1.22.0.tar.gz(r-4.7-any)timecoursedata_1.22.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
timecoursedata/json (API)
| # Install 'timecoursedata' in R: |
| install.packages('timecoursedata', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
- shoemaker2015 - Time course transcriptomic from mouse lung tissues infected with influenza
- varoquaux2019leaf - Time course transcriptomic data from leaf and root tissues exposed to drought stress
- varoquaux2019root - Time course transcriptomic data from leaf and root tissues exposed to drought stress
On BioConductor:timecoursedata-1.23.0(data/experiment 3.24)timecoursedata-1.22.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
expressiondatamicroarraydatarnaseqdatadatapkg
Last updated from:42a13264fa (on RELEASE_3_23). Checks:1 WARNING, 2 NOTE, 1 OK. Indexed: no.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 158 | ||
| linux-devel | NOTE | 267 | ||
| source / vignettes | OK | 389 | ||
| linux-release | NOTE | 241 |
Exports:load_shoemaker2015load_varoquaux2019
Dependencies:abindBiobaseBiocGenericsDelayedArraygenericsGenomicRangesIRangeslatticeMatrixMatrixGenericsmatrixStatsS4ArraysS4VectorsSeqinfoSparseArraySummarizedExperimentXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Loading the shoemaker2015 dataset as SummarizedExperiment | load_shoemaker2015 |
| Loading the varoquaux2019 leaf or root dataset as SummarizedExperiment | load_varoquaux2019 |
| Time course transcriptomic from mouse lung tissues infected with influenza | shoemaker2015 |
| Time course transcriptomic data from leaf and root tissues exposed to drought stress | varoquaux2019leaf varoquaux2019root |
