Package: transformGamPoi 1.18.0

Constantin Ahlmann-Eltze

transformGamPoi: Variance Stabilizing Transformation for Gamma-Poisson Models

Variance-stabilizing transformations help with the analysis of heteroskedastic data (i.e., data where the variance is not constant, like count data). This package provide two types of variance stabilizing transformations: (1) methods based on the delta method (e.g., 'acosh', 'log(x+1)'), (2) model residual based (Pearson and randomized quantile residuals).

Authors:Constantin Ahlmann-Eltze [aut, cre]

transformGamPoi_1.18.0.tar.gz
transformGamPoi_1.18.0.zip(r-4.7)transformGamPoi_1.18.0.zip(r-4.6)transformGamPoi_1.18.0.zip(r-4.5)
transformGamPoi_1.18.0.tgz(r-4.6-x86_64)transformGamPoi_1.18.0.tgz(r-4.6-arm64)transformGamPoi_1.18.0.tgz(r-4.5-x86_64)transformGamPoi_1.18.0.tgz(r-4.5-arm64)
transformGamPoi_1.18.0.tar.gz(r-4.7-arm64)transformGamPoi_1.18.0.tar.gz(r-4.7-x86_64)transformGamPoi_1.18.0.tar.gz(r-4.6-arm64)transformGamPoi_1.18.0.tar.gz(r-4.6-x86_64)
transformGamPoi_1.18.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
transformGamPoi/json (API)
NEWS

# Install 'transformGamPoi' in R:
install.packages('transformGamPoi', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/const-ae/transformgampoi/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:transformGamPoi-1.19.0(bioc 3.24)transformGamPoi-1.18.0(bioc 3.23)

singlecellnormalizationpreprocessingregressioncpp

6.17 score 22 stars 34 scripts 310 downloads 4 exports 38 dependencies

Last updated from:fcbe22969d (on RELEASE_3_23). Checks:1 NOTE, 13 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE174
linux-devel-arm64OK240
linux-devel-x86_64OK309
source / vignettesOK295
linux-release-arm64OK268
linux-release-x86_64OK275
macos-release-arm64OK215
macos-release-x86_64OK366
macos-oldrel-arm64OK176
macos-oldrel-x86_64OK287
windows-develOK1110
windows-releaseOK1103
windows-oldrelOK992
wasm-releaseOK180

Exports:acosh_transformresidual_transformshifted_log_transformtransformGamPoi

Dependencies:abindassortheadbeachmatBiobaseBiocGenericsbiocmakecliDelayedArrayDelayedMatrixStatsdir.expiryfilelockgenericsGenomicRangesglmGamPoiglueh5mreadHDF5ArrayIRangeslatticelifecycleMatrixMatrixGenericsmatrixStatsRcppRcppArmadillorhdf5rhdf5filtersRhdf5librlangS4ArraysS4VectorsSeqinfoSingleCellExperimentSparseArraysparseMatrixStatsSummarizedExperimentvctrsXVector

transformGamPoi Quickstart

Constantin Ahlmann-Eltze

Rendered fromtransformGamPoi.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2021-08-26
Started: 2021-08-26