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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "tximeta" in publications use:'
type: software
license: GPL-2.0-only
title: 'tximeta: Transcript Quantification Import with Automatic Metadata'
version: 1.30.0
doi: 10.1371/journal.pcbi.1007664
identifiers:
- type: doi
  value: 10.32614/CRAN.package.tximeta
abstract: Transcript quantification import from Salmon and other quantifiers with
  automatic attachment of transcript ranges and release information, and other associated
  metadata. De novo transcriptomes can be linked to the appropriate sources with linkedTxomes
  and shared for computational reproducibility.
authors:
- family-names: Love
  given-names: Michael
  email: michaelisaiahlove@gmail.com
- family-names: Soneson
  given-names: Charlotte
- family-names: Hickey
  given-names: Peter
- family-names: Patro
  given-names: Rob
preferred-citation:
  type: article
  title: 'Tximeta: Reference sequence checksums for provenance identification in RNA-seq'
  authors:
  - family-names: Love
    given-names: Michael I.
  - family-names: Soneson
    given-names: Charlotte
  - family-names: Hickey
    given-names: Peter F.
  - family-names: Johnson
    given-names: Lisa K.
  - family-names: Pierce
    given-names: N. Tessa
  - family-names: Shepherd
    given-names: Lori
  - family-names: Morgan
    given-names: Martin
  - family-names: Patro
    given-names: Rob
  year: '2020'
  volume: '16'
  issue: '2'
  journal: PLOS Computational Biology
  doi: 10.1371/journal.pcbi.1007664
  start: e1007664
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/thelovelab/tximeta
commit: fe803f92700131ac603f474754f56945224a5c31
url: https://github.com/thelovelab/tximeta
date-released: '2026-04-28'
contact:
- family-names: Love
  given-names: Michael
  email: michaelisaiahlove@gmail.com