Package: uncoverappLib 1.22.0

Emanuela Iovino

uncoverappLib: Interactive graphical application for clinical assessment of sequence coverage at the base-pair level

a Shiny application containing a suite of graphical and statistical tools to support clinical assessment of low coverage regions.It displays three web pages each providing a different analysis module: Coverage analysis, calculate AF by allele frequency app and binomial distribution. uncoverAPP provides a statisticl summary of coverage given target file or genes name.

Authors:Emanuela Iovino [cre, aut], Tommaso Pippucci [aut]

uncoverappLib_1.22.0.tar.gz
uncoverappLib_1.22.0.zip(r-4.7)uncoverappLib_1.22.0.zip(r-4.6)uncoverappLib_1.22.0.zip(r-4.5)
uncoverappLib_1.22.0.tgz(r-4.6-any)uncoverappLib_1.22.0.tgz(r-4.5-any)
uncoverappLib_1.22.0.tar.gz(r-4.7-any)uncoverappLib_1.22.0.tar.gz(r-4.6-any)
uncoverappLib_1.22.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
uncoverappLib/json (API)
NEWS

# Install 'uncoverappLib' in R:
install.packages('uncoverappLib', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/manuelaio/uncoverapplib/issues

On BioConductor:uncoverappLib-1.23.0(bioc 3.24)uncoverappLib-1.22.0(bioc 3.23)

softwarevisualizationannotationcoverage

4.65 score 3 stars 15 scripts 342 downloads 4 exports 175 dependencies

Last updated from:ade6a4fab6 (on RELEASE_3_23). Checks:8 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE368
linux-devel-x86_64NOTE709
source / vignettesOK535
linux-release-x86_64NOTE689
macos-release-arm64NOTE384
macos-oldrel-arm64NOTE309
windows-develNOTE554
windows-releaseNOTE528
windows-oldrelNOTE530
wasm-releaseOK379

Exports:buildInputgetAnnotationFilesrun.uncoverappuncoverAPP

Dependencies:abindAnnotationDbiAnnotationFilteraskpassbackportsbase64encBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelbiomaRtBiostringsbiovizBasebitbit64bitopsblobBSgenomebslibcachemcheckmatecigarillocliclustercodetoolscolorspacecommonmarkcondformatcpp11crayoncrosstalkcurldata.tableDBIdbplyrDelayedArraydeldirdichromatdigestdplyrDTEnsDb.Hsapiens.v75EnsDb.Hsapiens.v86ensembldbevaluatefarverfastmapfilelockfontawesomeforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2glueGO.dbgraphgridExtragtableGvizhighrHmischmsHomo.sapienshtmlTablehtmltoolshtmlwidgetshttpuvhttrhttr2interpIRangesisobandjpegjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlaterlatticelatticeExtralazyevallifecyclelitedownmagrittrmarkdownMASSMatrixMatrixGenericsmatrixStatsmemoisemimennetopensslopenxlsxorg.Hs.eg.dbOrganismDbiotelpillarpkgconfigpngprettyunitsprocessxprogresspromisesProtGenericspspurrrR6rappdirsRBGLRColorBrewerRcppRcppEigenRCurlrestfulrRhtslibrjsonrlangrlistrmarkdownrpartRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorsS7sassscalesSeqinfoshinyshinyBSshinycssloadersshinyjsshinyWidgetssnowsourcetoolsSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexTxDb.Hsapiens.UCSC.hg19.knownGeneTxDb.Hsapiens.UCSC.hg38.knownGeneUCSC.utilsutf8VariantAnnotationvctrsviridisLitewithrxfunXMLxml2xtableXVectoryamlzip

uncoverappLib: a R shiny package containing unCOVERApp an interactive graphical application for clinical assessment of sequence coverage at the base-pair level

Emanuela Iovino , Tommaso Pippucci

Rendered fromuncoverappLib.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2022-10-31
Started: 2020-05-25