Package: variants
Title: Annotating Genomic Variants
Version: 1.36.0
Date: 2025-07-18
Authors@R: c(
    person("Valerie", "Obenchain", role = "aut"),
    person("Martin", "Morgan", role = "ctb"),
    person(
        "Bioconductor Package Maintainer", role="cre",
        email = "maintainer@bioconductor.org"
    ))
Description: Read and write VCF files. Identify structural location of
        variants and compute amino acid coding changes for
        non-synonymous variants. Use SIFT and PolyPhen database
        packages to predict consequence of amino acid coding changes.
Depends: R (>= 3.3.0), GenomeInfoDb, VariantAnnotation, org.Hs.eg.db,
        TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome.Hsapiens.UCSC.hg19,
        PolyPhen.Hsapiens.dbSNP131
License: Artistic-2.0
Encoding: UTF-8
VignetteBuilder: knitr
biocViews: ImmunoOncologyWorkflow, AnnotationWorkflow, Workflow
Suggests: knitr, rmarkdown, BiocStyle
NeedsCompilation: no
URL: https://bioconductor.org/help/workflows/variants/
Config/pak/sysreqs: make libbz2-dev liblzma-dev libpng-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:43:22 UTC
RemoteUrl: https://github.com/bioc/variants
RemoteRef: RELEASE_3_23
RemoteSha: 97d5b9ac31f1bdcecb925f6c9e4a51dd6b12d044
Packaged: 2026-10-04 17:14:53 UTC; root
Author: Valerie Obenchain [aut],
  Martin Morgan [ctb],
  Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer@bioconductor.org>