Package: velociraptor
Title: Toolkit for Single-Cell Velocity
Version: 1.22.0
Date: 2026-04-15
Authors@R: c(person("Kevin", "Rue-Albrecht", role = c("aut", "cre"), email = "kevinrue67@gmail.com", comment = c(ORCID = "0000-0003-3899-3872")),
    person("Aaron", "Lun", role="aut", email="infinite.monkeys.with.keyboards@gmail.com", comment = c(ORCID = '0000-0002-3564-4813')),
    person("Charlotte", "Soneson", role="aut", email="charlottesoneson@gmail.com", comment = c(ORCID = '0000-0003-3833-2169')),
    person("Michael", "Stadler", role="aut", email="michael.stadler@fmi.ch", comment = c(ORCID = '0000-0002-2269-4934')))
Description: This package provides Bioconductor-friendly wrappers for
        RNA velocity calculations in single-cell RNA-seq data. We use
        the basilisk package to manage Conda environments, and the
        zellkonverter package to convert data structures between
        SingleCellExperiment (R) and AnnData (Python). The information
        produced by the velocity methods is stored in the various
        components of the SingleCellExperiment class.
Depends: SummarizedExperiment
Imports: methods, stats, Matrix, BiocGenerics, reticulate, S4Vectors,
        DelayedArray, basilisk, zellkonverter, scuttle,
        SingleCellExperiment, BiocParallel, BiocSingular
Suggests: BiocStyle, testthat, knitr, rmarkdown, pkgdown, scran,
        scater, scRNAseq, Rtsne, graphics, grDevices, ggplot2, cowplot,
        GGally, patchwork, metR
StagedInstall: no
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.2
URL: https://github.com/kevinrue/velociraptor
BugReports: https://github.com/kevinrue/velociraptor/issues
biocViews: SingleCell, GeneExpression, Sequencing, Coverage
VignetteBuilder: knitr
Config/pak/sysreqs: libpng-dev python3 zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:53:48 UTC
RemoteUrl: https://github.com/bioc/velociraptor
RemoteRef: RELEASE_3_23
RemoteSha: 079171a4ee0c4e1cfdd1524c3607decd4e7dc03b
NeedsCompilation: no
Packaged: 2026-10-01 12:25:01 UTC; root
Author: Kevin Rue-Albrecht [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3899-3872>),
  Aaron Lun [aut] (ORCID: <https://orcid.org/0000-0002-3564-4813>),
  Charlotte Soneson [aut] (ORCID:
    <https://orcid.org/0000-0003-3833-2169>),
  Michael Stadler [aut] (ORCID: <https://orcid.org/0000-0002-2269-4934>)
Maintainer: Kevin Rue-Albrecht <kevinrue67@gmail.com>