Installation | Introduction
Package: veloviz 1.18.0
Lyla Atta
veloviz: VeloViz: RNA-velocity informed 2D embeddings for visualizing cell state trajectories
VeloViz uses each cell’s current observed and predicted future transcriptional states inferred from RNA velocity analysis to build a nearest neighbor graph between cells in the population. Edges are then pruned based on a cosine correlation threshold and/or a distance threshold and the resulting graph is visualized using a force-directed graph layout algorithm. VeloViz can help ensure that relationships between cell states are reflected in the 2D embedding, allowing for more reliable representation of underlying cellular trajectories.
Authors:
veloviz_1.18.0.tar.gz
veloviz_1.18.0.zip(r-4.7-x86_64)veloviz_1.18.0.zip(r-4.6-x86_64)veloviz_1.18.0.zip(r-4.5-x86_64)
veloviz_1.18.0.tgz(r-4.6-x86_64)veloviz_1.18.0.tgz(r-4.6-arm64)veloviz_1.18.0.tgz(r-4.5-x86_64)veloviz_1.18.0.tgz(r-4.5-arm64)
veloviz_1.18.0.tar.gz(r-4.7-arm64)veloviz_1.18.0.tar.gz(r-4.7-x86_64)veloviz_1.18.0.tar.gz(r-4.6-arm64)veloviz_1.18.0.tar.gz(r-4.6-x86_64)
veloviz_1.18.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
veloviz/json (API)
| # Install 'veloviz' in R: |
| install.packages('veloviz', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:veloviz-1.19.0(bioc 3.24)veloviz-1.18.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
transcriptomicsvisualizationgeneexpressionsequencingrnaseqdimensionreductioncpp
Last updated from:efec7c1113 (on RELEASE_3_23). Checks:1 WARNING, 13 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 168 | ||
| linux-devel-arm64 | OK | 168 | ||
| linux-devel-x86_64 | OK | 222 | ||
| source / vignettes | OK | 223 | ||
| linux-release-arm64 | OK | 163 | ||
| linux-release-x86_64 | OK | 204 | ||
| macos-release-arm64 | OK | 109 | ||
| macos-release-x86_64 | OK | 409 | ||
| macos-oldrel-arm64 | OK | 105 | ||
| macos-oldrel-x86_64 | OK | 228 | ||
| windows-devel | OK | 129 | ||
| windows-release | OK | 143 | ||
| windows-oldrel | OK | 124 | ||
| wasm-release | OK | 153 |
Exports:asNNGraphbuildVelovizgraphViznormalizeDepthnormalizeVarianceplotEmbeddingplotVelovizprojectedNeighborsreduceDimensions
Dependencies:clicpp11glueigraphlatticelifecyclemagrittrMatrixmgcvnlmepkgconfigRcppRcppEigenrlangRSpectravctrs
