Package: vidger 1.32.0

Brandon Monier

vidger: Create rapid visualizations of RNAseq data in R

The aim of vidger is to rapidly generate information-rich visualizations for the interpretation of differential gene expression results from three widely-used tools: Cuffdiff, DESeq2, and edgeR.

Authors:Brandon Monier [aut, cre], Adam McDermaid [aut], Jing Zhao [aut], Qin Ma [aut, fnd]

vidger_1.32.0.tar.gz
vidger_1.32.0.zip(r-4.7)vidger_1.32.0.zip(r-4.6)vidger_1.32.0.zip(r-4.5)
vidger_1.32.0.tgz(r-4.6-any)vidger_1.32.0.tgz(r-4.5-any)
vidger_1.32.0.tar.gz(r-4.7-any)vidger_1.32.0.tar.gz(r-4.6-any)
vidger_1.32.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
vidger/json (API)
NEWS

# Install 'vidger' in R:
install.packages('vidger', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/btmonier/vidger/issues

Datasets:

On BioConductor:vidger-1.33.0(bioc 3.24)vidger-1.32.0(bioc 3.23)

immunooncologyvisualizationrnaseqdifferentialexpressiongeneexpressiondata-mungingdifferential-expressiongene-expressionrna-seq-analysis

6.92 score 20 stars 35 scripts 470 downloads 2 mentions 9 exports 90 dependencies

Last updated from:b2167d3ec8 (on RELEASE_3_23). Checks:1 WARNING, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksWARNING197
linux-devel-x86_64OK415
source / vignettesOK335
linux-release-x86_64OK410
macos-release-arm64OK204
macos-oldrel-arm64OK207
windows-develOK336
windows-releaseOK290
windows-oldrelOK277
wasm-releaseOK159

Exports:vsBoxPlotvsDEGMatrixvsFourWayvsMAMatrixvsMAPlotvsScatterMatrixvsScatterPlotvsVolcanovsVolcanoMatrix

Dependencies:abindbase64encBHBiobaseBiocGenericsBiocParallelbslibcachemclicodetoolscpp11crayonDelayedArrayDESeq2digestdplyredgeRevaluatefarverfastmapfontawesomeforcatsformatRfsfutile.loggerfutile.optionsgenericsGenomicRangesGGallyggplot2ggrepelggstatsgluegtablehighrhmshtmltoolsIRangesisobandjquerylibjsonliteknitrlabelinglambda.rlatticelifecyclelimmalocfitmagrittrMatrixMatrixGenericsmatrixStatsmemoisemimepatchworkpillarpkgconfigprettyunitsprogresspurrrR6rappdirsRColorBrewerRcppRcppArmadillorlangrmarkdownS4ArraysS4VectorsS7sassscalesSeqinfosnowSparseArraystatmodstringistringrSummarizedExperimenttibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunXVectoryaml

ViDGER Supplementary Material

Brandon Monier, Adam McDermaid, Jing Zhao, Qin Ma

Rendered fromvidger.Rmdusingknitr::rmarkdownon May 25 2026.

Last update: 2019-07-15
Started: 2018-02-16