Package: vtpnet 0.52.0

VJ Carey

vtpnet: variant-transcription factor-phenotype networks

variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828

Authors:VJ Carey <[email protected]>

vtpnet_0.52.0.tar.gz
vtpnet_0.52.0.zip(r-4.7)vtpnet_0.52.0.zip(r-4.6)vtpnet_0.52.0.zip(r-4.5)
vtpnet_0.52.0.tgz(r-4.6-any)vtpnet_0.52.0.tgz(r-4.5-any)
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vtpnet_0.52.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
vtpnet/json (API)

# Install 'vtpnet' in R:
install.packages('vtpnet', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • cancerMap - Variant-transcription factor-phenotype networks
  • maurGWAS - Variant-transcription factor-phenotype networks
  • pax4 - Variant-transcription factor-phenotype networks
  • pax4_75 - Variant-transcription factor-phenotype networks
  • pax4_85 - Variant-transcription factor-phenotype networks

On BioConductor:vtpnet-0.53.0(bioc 3.24)vtpnet-0.52.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

network

3.30 score 2 scripts 9 exports 105 dependencies

Last updated from:a55a3edfc8 (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR246
linux-devel-x86_64NOTE447
source / vignettesOK344
linux-release-x86_64NOTE442
macos-release-arm64NOTE308
macos-oldrel-arm64NOTE263
windows-develNOTE344
windows-releaseNOTE334
windows-oldrelNOTE358
wasm-releaseOK165

Exports:filterGWASbyMapgetMtagsgetOneHitsgwMatchPWMmatrcMdbSearchToDiskrng2facHitsrunfimosetupGWPM

Dependencies:abindAnnotationDbiAnnotationHubaskpassBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionBiostringsbitbit64bitopsblobBSgenomecachemcigarilloclicliprcodetoolscpp11crayoncurldata.tableDBIdbplyrDelayedArraydoParalleldplyrfastmapfilelockforeachformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesgluegraphgwascathmshttrhttr2IRangesiteratorsjsonliteKEGGRESTlambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigpngprettyunitsprogresspurrrR6rappdirsRCurlreadrrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsSeqinfosnowsnpStatsSparseArraystringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttzdbUCSC.utilsutf8VariantAnnotationvctrsvroomwithrXMLXVectoryaml

vtpnet: variant-transcription factor-network tools

Rendered fromvtpnet.Rnwusingutils::Sweaveon Jun 19 2026.

Last update: 2020-10-21
Started: 2013-05-30

Readme and manuals

Help Manual

Help pageTopics
variant-transcription factor-phenotype networksvtpnet-package cancerMap filterGWASbyMap getMtags getOneHits gwMatchPWM matrc maurGWAS MdbSearchToDisk pax4 pax4_75 pax4_85 rng2facHits runfimo setupGWPM vtpnet