Package: wiggleplotr 1.36.0

Kaur Alasoo

wiggleplotr: Make read coverage plots from BigWig files

Tools to visualise read coverage from sequencing experiments together with genomic annotations (genes, transcripts, peaks). Introns of long transcripts can be rescaled to a fixed length for better visualisation of exonic read coverage.

Authors:Kaur Alasoo [aut, cre]

wiggleplotr_1.36.0.tar.gz
wiggleplotr_1.36.0.zip(r-4.7)wiggleplotr_1.36.0.zip(r-4.6)wiggleplotr_1.36.0.zip(r-4.5)
wiggleplotr_1.36.0.tgz(r-4.6-any)wiggleplotr_1.36.0.tgz(r-4.5-any)
wiggleplotr_1.36.0.tar.gz(r-4.7-any)wiggleplotr_1.36.0.tar.gz(r-4.6-any)
wiggleplotr_1.36.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
wiggleplotr/json (API)
NEWS

# Install 'wiggleplotr' in R:
install.packages('wiggleplotr', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:wiggleplotr-1.37.0(bioc 3.24)wiggleplotr-1.36.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologycoveragernaseqchipseqsequencingvisualizationgeneexpressiontranscriptionalternativesplicing

6.49 score 3 packages 34 scripts 4 mentions 10 exports 75 dependencies

Last updated from:17d23cc5e7 (on RELEASE_3_23). Checks:6 WARNING, 2 ERROR, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksWARNING235
linux-devel-x86_64ERROR305
source / vignettesOK305
linux-release-x86_64WARNING277
macos-release-arm64WARNING170
macos-oldrel-arm64WARNING155
windows-develERROR202
windows-releaseWARNING213
windows-oldrelWARNING187
wasm-releaseOK240

Exports:extractCoverageDatagetGenotypePalettemakeManhattanPlotplotCoverageplotCoverageDataplotCoverageFromEnsembldbplotCoverageFromUCSCplotTranscriptsplotTranscriptsFromEnsembldbplotTranscriptsFromUCSC

Dependencies:abindaskpassassertthatBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitopscigarilloclicodetoolscowplotcpp11crayoncurlDelayedArraydplyrfarverformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicRangesggplot2gluegtablehttrIRangesisobandjsonlitelabelinglambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeopensslpillarpkgconfigpurrrR6RColorBrewerRCurlrestfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorsS7scalesSeqinfosnowSparseArraySummarizedExperimentsystibbletidyselectUCSC.utilsutf8vctrsviridisLitewithrXMLXVectoryaml

Introduction to wiggleplotr

Kaur Alasoo

Rendered fromwiggleplotr.Rmdusingknitr::rmarkdownon Jun 18 2026.

Last update: 2026-03-18
Started: 2017-01-07