Package: wpm 1.22.0

Helene Borges

wpm: Well Plate Maker

The Well-Plate Maker (WPM) is a shiny application deployed as an R package. Functions for a command-line/script use are also available. The WPM allows users to generate well plate maps to carry out their experiments while improving the handling of batch effects. In particular, it helps controlling the "plate effect" thanks to its ability to randomize samples over multiple well plates. The algorithm for placing the samples is inspired by the backtracking algorithm: the samples are placed at random while respecting specific spatial constraints.

Authors:Helene Borges [aut, cre], Thomas Burger [aut]

wpm_1.22.0.tar.gz
wpm_1.22.0.zip(r-4.7)wpm_1.22.0.zip(r-4.6)wpm_1.22.0.zip(r-4.5)
wpm_1.22.0.tgz(r-4.6-any)wpm_1.22.0.tgz(r-4.5-any)
wpm_1.22.0.tar.gz(r-4.7-any)wpm_1.22.0.tar.gz(r-4.6-any)
wpm_1.22.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
wpm/json (API)
NEWS

# Install 'wpm' in R:
install.packages('wpm', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/helbor/wpm/issues

Datasets:
  • data_test - Fictitious clinical data for demonstration.

On BioConductor:wpm-1.23.0(bioc 3.24)wpm-1.22.0(bioc 3.23)

guiproteomicsmassspectrometrybatcheffectexperimentaldesign

4.78 score 6 stars 7 scripts 342 downloads 7 exports 86 dependencies

Last updated from:c37c2e94b0 (on RELEASE_3_23). Checks:8 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE152
linux-devel-x86_64NOTE247
source / vignettesOK250
linux-release-x86_64NOTE357
macos-release-arm64NOTE181
macos-oldrel-arm64NOTE107
windows-develNOTE167
windows-releaseNOTE127
windows-oldrelNOTE153
wasm-releaseOK167

Exports:convertCSVconvertESetconvertSEconvertVector2DfdrawMapwpmwrapperWPM

Dependencies:abindattemptbase64encBiobaseBiocGenericsbslibcachemclicommonmarkconfigcpp11crosstalkDelayedArraydigestdplyrDTevaluatefarverfastmapfontawesomefsgenericsGenomicRangesggplot2gluegolemgtableherehighrhtmltoolshtmlwidgetshttpuvIRangesisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecycleloggingmagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeotelpillarpkgconfigpromisesR6rappdirsRColorBrewerRcpprlangrmarkdownrprojrootS4ArraysS4VectorsS7sassscalesSeqinfoshinyshinycustomloadershinydashboardshinyWidgetssourcetoolsSparseArraystringistringrSummarizedExperimenttibbletidyselecttinytexutf8vctrsviridisLitewithrxfunxtableXVectoryaml

How to use Well Plate Maker

Helene Borges

Rendered fromwpm_vignette.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2021-03-17
Started: 2020-04-29