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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "wppi" in publications use:'
type: software
license: MIT
title: 'wppi: Weighting protein-protein interactions'
version: 1.20.0
doi: 10.32614/CRAN.package.wppi
abstract: Protein-protein interaction data is essential for omics data analysis and
  modeling. Database knowledge is general, not specific for cell type, physiological
  condition or any other context determining which connections are functional and
  contribute to the signaling. Functional annotations such as Gene Ontology and Human
  Phenotype Ontology might help to evaluate the relevance of interactions. This package
  predicts functional relevance of protein-protein interactions based on functional
  annotations such as Human Protein Ontology and Gene Ontology, and prioritizes genes
  based on network topology, functional scores and a path search algorithm.
authors:
- family-names: Galhoz
  given-names: Ana
  email: ana.galhoz@helmholtz-muenchen.de
  orcid: https://orcid.org/0000-0001-7402-5292
- family-names: Turei
  given-names: Denes
  email: turei.denes@gmail.com
  orcid: https://orcid.org/0000-0002-7249-9379
- family-names: P. Menden
  given-names: Michael
  email: michael.menden@helmholtz-muenchen.de
  orcid: https://orcid.org/0000-0003-0267-5792
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/AnaGalhoz37/wppi
commit: 0db098305be91a56336aac767e864b5f4983bec1
url: https://github.com/AnaGalhoz37/wppi
date-released: '2026-04-28'
contact:
- family-names: Galhoz
  given-names: Ana
  email: ana.galhoz@helmholtz-muenchen.de
  orcid: https://orcid.org/0000-0001-7402-5292