Package: AnVILWorkflow 1.12.0

Sehyun Oh

AnVILWorkflow: Run workflows implemented in Terra/AnVIL workspace

The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The main cloud-based genomics platform deported by the AnVIL project is Terra. The AnVILWorkflow package allows remote access to Terra implemented workflows, enabling end-user to utilize Terra/ AnVIL provided resources - such as data, workflows, and flexible/scalble computing resources - through the conventional R functions.

Authors:Sehyun Oh [aut, cre], Marcel Ramos [ctb], Kai Gravel-Pucillo [aut]

AnVILWorkflow_1.12.0.tar.gz
AnVILWorkflow_1.12.0.zip(r-4.7)AnVILWorkflow_1.12.0.zip(r-4.6)AnVILWorkflow_1.12.0.zip(r-4.5)
AnVILWorkflow_1.12.0.tgz(r-4.6-any)AnVILWorkflow_1.12.0.tgz(r-4.5-any)
AnVILWorkflow_1.12.0.tar.gz(r-4.7-any)AnVILWorkflow_1.12.0.tar.gz(r-4.6-any)
AnVILWorkflow_1.12.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
AnVILWorkflow/json (API)
NEWS

# Install 'AnVILWorkflow' in R:
install.packages('AnVILWorkflow', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/shbrief/anvilworkflow/issues

On BioConductor:AnVILWorkflow-1.13.0(bioc 3.24)AnVILWorkflow-1.11.0(bioc 3.23)

infrastructuresoftwareanvilgcpterrau24hg010263workflows

5.62 score 7 stars 3 scripts 18 exports 74 dependencies

Last updated from:ea7825be15 (on RELEASE_3_23). Checks:1 WARNING, 7 ERROR, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksWARNING151
linux-devel-x86_64ERROR200
source / vignettesOK303
linux-release-x86_64ERROR169
macos-release-arm64ERROR93
macos-oldrel-arm64ERROR87
windows-develERROR98
windows-releaseERROR95
windows-oldrelERROR87
wasm-releaseOK126

Exports:AnVILBrowseavailableAnalysiscloneWorkspacecurrentInputfindInputNamegetAllDataTablesgetAllWorkflowsgetDashboardgetDatagetOutputgetWorkflowConfiggetWorkflowsgetWorkspacesmonitorWorkflowrunWorkflowsetCloudEnvstopWorkflowupdateInput

Dependencies:AnVILAnVILBaseAnVILGCPaskpassbase64encBiocBaseUtilsbslibcachemclicommonmarkcpp11crosstalkcurldigestdplyrDTevaluatefastmapfilelockfontawesomeformatRfsfutile.loggerfutile.optionsGCPtoolsgenericsgluehighrhtmltoolshtmlwidgetshttpuvhttrhttr2jquerylibjsonlitekeyringknitrlambda.rlaterlazyevallifecyclemagrittrmemoisemimeminiUIopensslotelpillarpkgconfigplyrpromisespurrrR6rapiclientrappdirsRcpprlangrmarkdownsassshinysourcetoolsstringistringrsystibbletidyrtidyselecttinytexutf8vctrswithrxfunxtableyaml

AnVILWorkflow: Run batch analysis workflows including non-R tools leveraing Cloud resources

Sehyun Oh

Rendered fromsalmon.Rmdusingknitr::rmarkdownon Jun 16 2026.

Last update: 2026-04-23
Started: 2022-10-08