Introduction | Load example data sets | Relevance network and consistency score | Pruning the relevance network | Activity score prediction | Inferring signature activation in an independent data set | DoDART function | Enhanced DoDART function - DoDARTCLQ | Citing the DART package | References | Session information
Package: DART 1.60.0
Charles Shijie Zheng
DART: Denoising Algorithm based on Relevance network Topology
Denoising Algorithm based on Relevance network Topology (DART) is an algorithm designed to evaluate the consistency of prior information molecular signatures (e.g in-vitro perturbation expression signatures) in independent molecular data (e.g gene expression data sets). If consistent, a pruning network strategy is then used to infer the activation status of the molecular signature in individual samples.
Authors:
DART_1.60.0.tar.gz
DART_1.60.0.zip(r-4.7-any)DART_1.60.0.zip(r-4.6-any)DART_1.60.0.zip(r-4.5-any)
DART_1.60.0.tgz(r-4.6-any)DART_1.60.0.tgz(r-4.5-any)
DART_1.60.0.tar.gz(r-4.7-any)DART_1.60.0.tar.gz(r-4.6-any)
DART_1.60.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
DART/json (API)
| # Install 'DART' in R: |
| install.packages('DART', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- dataDART - Example data for DART package
On BioConductor:DART-1.61.0(bioc 3.24)DART-1.60.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
geneexpressiondifferentialexpressiongraphandnetworkpathways
Last updated from:cc68a52d0d (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 134 | ||
| linux-devel | NOTE | 209 | ||
| source / vignettes | OK | 225 | ||
| linux-release | NOTE | 156 | ||
| macos-release | NOTE | 103 | ||
| macos-oldrel | NOTE | 104 | ||
| windows-devel | NOTE | 85 | ||
| windows-release | NOTE | 84 | ||
| windows-oldrel | NOTE | 73 | ||
| wasm-release | OK | 100 |
Exports:BuildRNDoDARTDoDARTCLQEvalConsNetPredActScorePruneNet
Dependencies:clicpp11glueigraphlatticelifecyclemagrittrMatrixpkgconfigrlangvctrs
