Package: GEOexplorer 1.18.0

Guy Hunt

GEOexplorer: GEOexplorer: a webserver for gene expression analysis and visualisation

GEOexplorer is a webserver and R/Bioconductor package and web application that enables users to perform gene expression analysis. The development of GEOexplorer was made possible because of the excellent code provided by GEO2R (https: //www.ncbi.nlm.nih.gov/geo/geo2r/).

Authors:Guy Hunt [aut, cre], Rafael Henkin [ctb, ths], Alfredo Iacoangeli [ctb, ths], Fabrizio Smeraldi [ctb, ths], Michael Barnes [ctb, ths]

GEOexplorer_1.18.0.tar.gz
GEOexplorer_1.18.0.zip(r-4.7)GEOexplorer_1.18.0.zip(r-4.6)GEOexplorer_1.18.0.zip(r-4.5)
GEOexplorer_1.18.0.tgz(r-4.6-any)GEOexplorer_1.18.0.tgz(r-4.5-any)
GEOexplorer_1.18.0.tar.gz(r-4.7-any)GEOexplorer_1.18.0.tar.gz(r-4.6-any)
GEOexplorer_1.18.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
GEOexplorer/json (API)

# Install 'GEOexplorer' in R:
install.packages('GEOexplorer', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/guypwhunt/geoexplorer/issues

On CRAN:

Conda:

softwaregeneexpressionmrnamicroarraydifferentialexpressionmicroarraymicrornaarraytranscriptomicsrnaseq

4.63 score 5 stars 19 scripts 306 downloads 1 exports 223 dependencies

Last updated from:d9177c24e7 (on RELEASE_3_23). Checks:1 WARNING, 7 ERROR, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksWARNING246
linux-devel-x86_64ERROR528
source / vignettesOK354
linux-release-x86_64ERROR532
macos-release-arm64ERROR356
macos-oldrel-arm64ERROR336
windows-develERROR440
windows-releaseERROR415
windows-oldrelERROR397
wasm-releaseOK204

Exports:loadApp

Dependencies:abindannotateAnnotationDbiaskpassassertthatbackportsbase64encBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64blobbootbroombslibcacachemcallrcarcarDatacellrangerclicliprclustercodetoolscolorspacecommonmarkcorrplotcowplotcpp11crayoncrosstalkcurldata.tableDBIDelayedArraydendextendDerivdigestdoBydplyrDTedgeReggellipseemmeansenrichRestimabilityevaluatefactoextraFactoMineRfarverfastmapflashClustfontawesomeforeachforecastformatRFormulafracdifffsfutile.loggerfutile.optionsgclusgenefiltergenericsGenomicRangesGEOqueryggplot2ggpubrggrepelggsciggsignifgluegridExtragtableheatmaplyherehighrhmshtmltoolshtmlwidgetshttpuvhttrhttr2imputeIRangesisobanditeratorsjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlaterlatticelazyevalleapslifecyclelimmalitedownlme4lmtestlocfitmagrittrmarkdownMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrmultcompViewmvtnormnlmenloptrnnetnumDerivopensslotelpbkrtestpermutepheatmappillarpkgconfigplotlyplyrpngpolynomprettyunitsprocessxprogresspromisespspurrrqapquantregR.methodsS3R.ooR.utilsR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRcppTOMLRdpackreadrreadxlreformulasregistryrematchrentrezreshape2reticulaterjsonrlangrmarkdownrprojrootRSpectraRSQLiterstatixrvestS4ArraysS4VectorsS7sassscalesscatterplot3dselectrSeqinfoseriationshinyshinybusyshinycssloadersshinyHeatmaplysnowsourcetoolsSparseArraySparseMstatmodstringistringrSummarizedExperimentsurvivalsvasystibbletidyrtidyselecttimeDatetinytexTSPtzdbumapurcautf8vctrsveganviridisviridisLitevroomwebshotwithrWriteXLSxfunXMLxml2xtableXVectoryamlzoo

GEOexplorer

Guy Hunt

Rendered fromGEOexplorer.Rmdusingknitr::rmarkdownon May 31 2026.

Last update: 2023-10-11
Started: 2021-07-26