Package: GOpro 1.38.0

Lidia Chrabaszcz

GOpro: Find the most characteristic gene ontology terms for groups of human genes

Find the most characteristic gene ontology terms for groups of human genes. This package was created as a part of the thesis which was developed under the auspices of MI^2 Group (http://mi2.mini.pw.edu.pl/, https://github.com/geneticsMiNIng).

Authors:Lidia Chrabaszcz

GOpro_1.38.0.tar.gz
GOpro_1.38.0.zip(r-4.7)GOpro_1.38.0.zip(r-4.6)GOpro_1.38.0.zip(r-4.5)
GOpro_1.38.0.tgz(r-4.6-x86_64)GOpro_1.38.0.tgz(r-4.6-arm64)GOpro_1.38.0.tgz(r-4.5-x86_64)GOpro_1.38.0.tgz(r-4.5-arm64)
GOpro_1.38.0.tar.gz(r-4.7-arm64)GOpro_1.38.0.tar.gz(r-4.7-x86_64)GOpro_1.38.0.tar.gz(r-4.6-arm64)GOpro_1.38.0.tar.gz(r-4.6-x86_64)
GOpro_1.38.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
GOpro/json (API)
NEWS

# Install 'GOpro' in R:
install.packages('GOpro', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mi2-warsaw/gopro/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • exrtcga - Expressions of human genes.

On BioConductor:GOpro-1.39.0(bioc 3.24)GOpro-1.38.0(bioc 3.23)

annotationclusteringgogeneexpressiongenesetenrichmentmultiplecomparisoncpp

3.60 score 2 stars 4 scripts 436 downloads 1 exports 78 dependencies

Last updated from:a4b5762168 (on RELEASE_3_23). Checks:1 ERROR, 13 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR254
linux-devel-arm64OK339
linux-devel-x86_64OK464
source / vignettesOK311
linux-release-arm64OK330
linux-release-x86_64OK445
macos-release-arm64OK245
macos-release-x86_64OK602
macos-oldrel-arm64OK214
macos-oldrel-x86_64OK589
windows-develOK797
windows-releaseOK714
windows-oldrelOK804
wasm-releaseOK220

Exports:findGO

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocBaseUtilsBiocGenericsBiostringsbitbit64blobcachemclicodetoolscpp11crayoncurlDBIDelayedArraydendextenddoParalleldplyrfarverfastmapforeachgenericsGenomicRangesggplot2glueGO.dbgridExtragtablehttrIRangesisobanditeratorsjsonliteKEGGRESTlabelinglatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeMultiAssayExperimentopensslorg.Hs.eg.dbpillarpkgconfigpngpurrrR6RColorBrewerRcpprlangRSQLiteS4ArraysS4VectorsS7scalesSeqinfoSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectutf8vctrsviridisviridisLitewithrXVector

GOpro: Determine groups of genes and find their most characteristic GO term

Lidia Chrabaszcz

Rendered fromGOpro_vignette.Rmdusingknitr::rmarkdownon May 31 2026.

Last update: 2018-08-30
Started: 2016-10-07