Package: IdeoViz 1.48.0

Shraddha Pai

IdeoViz: Plots data (continuous/discrete) along chromosomal ideogram

Plots data associated with arbitrary genomic intervals along chromosomal ideogram.

Authors:Shraddha Pai <[email protected]>, Jingliang Ren

IdeoViz_1.48.0.tar.gz
IdeoViz_1.48.0.zip(r-4.7-any)IdeoViz_1.48.0.zip(r-4.6-any)IdeoViz_1.48.0.zip(r-4.5-any)
IdeoViz_1.48.0.tgz(r-4.6-any)IdeoViz_1.48.0.tgz(r-4.5-any)
IdeoViz_1.48.0.tar.gz(r-4.7-any)IdeoViz_1.48.0.tar.gz(r-4.6-any)
IdeoViz_1.48.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
IdeoViz/json (API)

# Install 'IdeoViz' in R:
install.packages('IdeoViz', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:IdeoViz-1.49.0(bioc 3.24)IdeoViz-1.48.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

visualizationmicroarray

3.88 score 25 scripts 584 downloads 3 mentions 5 exports 51 dependencies

Last updated from:1c868ddff8 (on RELEASE_3_23). Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR179
linux-develWARNING358
source / vignettesOK213
linux-releaseWARNING286
macos-releaseWARNING228
macos-oldrelWARNING191
windows-develWARNING183
windows-releaseWARNING180
windows-oldrelWARNING190
wasm-releaseOK117

Exports:avgByBingetBinsgetIdeoplotChromValuePairplotOnIdeo

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitopscigarillocodetoolscpp11crayoncurlDelayedArrayformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicRangeshttrIRangesjsonlitelambda.rlatticeMatrixMatrixGenericsmatrixStatsmimeopensslR6RColorBrewerRCurlrestfulrRhtslibrjsonRsamtoolsrtracklayerS4ArraysS4VectorsSeqinfosnowSparseArraySummarizedExperimentsysUCSC.utilsXMLXVectoryaml