Package: KEGGandMetacoreDzPathwaysGEO 1.32.0
Gaurav Bhatti
KEGGandMetacoreDzPathwaysGEO: Disease Datasets from GEO
This is a collection of 18 data sets for which the phenotype is a disease with a corresponding pathway in either KEGG or metacore database.This collection of datasets were used as gold standard in comparing gene set analysis methods.
Authors:
KEGGandMetacoreDzPathwaysGEO_1.32.0.tar.gz
KEGGandMetacoreDzPathwaysGEO_1.32.0.tar.gz(r-4.7-any)KEGGandMetacoreDzPathwaysGEO_1.32.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
KEGGandMetacoreDzPathwaysGEO/json (API)
| # Install 'KEGGandMetacoreDzPathwaysGEO' in R: |
| install.packages('KEGGandMetacoreDzPathwaysGEO', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- GSE1145 - Data Set Id: GSE1145
- GSE11906 - Data Set Id: GSE11906
- GSE14924_CD4 - Data Set Id: GSE14924_CD4
- GSE14924_CD8 - Data Set Id: GSE14924_CD8
- GSE16759 - Data Set Id: GSE16759
- GSE19420 - Data Set Id: GSE19420
- GSE20164 - Data Set Id: GSE20164
- GSE22780 - Data Set Id: GSE22780
- GSE23878 - Data Set Id: GSE23878
- GSE24739_G0 - Data Set Id: GSE24739_G0
- GSE24739_G1 - Data Set Id: GSE24739_G1
- GSE30153 - Data Set Id: GSE30153
- GSE32676 - Data Set Id: GSE32676
- GSE38666_epithelia - Data Set Id: GSE38666_epithelia
- GSE38666_stroma - Data Set Id: GSE38666_stroma
- GSE4183 - Data Set Id: GSE4183
- GSE42057 - Data Set Id: GSE42057
- GSE7305 - Data Set Id: GSE7305
On BioConductor:KEGGandMetacoreDzPathwaysGEO-1.33.0(data/experiment 3.24)KEGGandMetacoreDzPathwaysGEO-1.32.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:6f1efdfbe6 (on RELEASE_3_23). Checks:1 ERROR, 3 OK. Indexed: no.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 121 | ||
| linux-devel | OK | 216 | ||
| source / vignettes | OK | 276 | ||
| linux-release | OK | 209 |
Exports:
Dependencies:BiobaseBiocGenericsgenerics
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| GEO Data Sets used to compare gene set analysis methods. | KEGGandMetacoreDzPathwaysGEO-package KEGGandMetacoreDzPathwaysGEO |
| Data Set Id: GSE1145 | GSE1145 |
| Data Set Id: GSE11906 | GSE11906 |
| Data Set Id: GSE14924_CD4 | GSE14924_CD4 |
| Data Set Id: GSE14924_CD8 | GSE14924_CD8 |
| Data Set Id: GSE16759 | GSE16759 |
| Data Set Id: GSE19420 | GSE19420 |
| Data Set Id: GSE20164 | GSE20164 |
| Data Set Id: GSE22780 | GSE22780 |
| Data Set Id: GSE23878 | GSE23878 |
| Data Set Id: GSE24739_G0 | GSE24739_G0 |
| Data Set Id: GSE24739_G1 | GSE24739_G1 |
| Data Set Id: GSE30153 | GSE30153 |
| Data Set Id: GSE32676 | GSE32676 |
| Data Set Id: GSE38666_epithelia | GSE38666_epithelia |
| Data Set Id: GSE38666_stroma | GSE38666_stroma |
| Data Set Id: GSE4183 | GSE4183 |
| Data Set Id: GSE42057 | GSE42057 |
| Data Set Id: GSE7305 | GSE7305 |