Package: PADOG 1.54.0

Adi L. Tarca

PADOG: Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)

This package implements a general purpose gene set analysis method called PADOG that downplays the importance of genes that apear often accross the sets of genes to be analyzed. The package provides also a benchmark for gene set analysis methods in terms of sensitivity and ranking using 24 public datasets from KEGGdzPathwaysGEO package.

Authors:Adi Laurentiu Tarca <[email protected]>; Zhonghui Xu <[email protected]>

PADOG_1.54.0.tar.gz
PADOG_1.54.0.zip(r-4.7)PADOG_1.54.0.zip(r-4.6)PADOG_1.54.0.zip(r-4.5)
PADOG_1.54.0.tgz(r-4.6-any)PADOG_1.54.0.tgz(r-4.5-any)
PADOG_1.54.0.tar.gz(r-4.7-any)PADOG_1.54.0.tar.gz(r-4.6-any)
PADOG_1.54.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PADOG/json (API)

# Install 'PADOG' in R:
install.packages('PADOG', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:PADOG-1.55.0(bioc 3.24)PADOG-1.54.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarrayonechanneltwochannel

5.28 score 2 packages 16 scripts 536 downloads 19 mentions 3 exports 50 dependencies

Last updated from:b12f8bd6cb (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR204
linux-devel-x86_64NOTE354
source / vignettesOK318
linux-release-x86_64NOTE337
macos-release-arm64NOTE239
macos-oldrel-arm64NOTE198
windows-develNOTE272
windows-releaseNOTE236
windows-oldrelNOTE286
wasm-releaseOK158

Exports:compPADOGfilteranotpadog

Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicodetoolscpp11crayoncurlDBIdigestdoRNGfastmapforeachgenericsglueGSAhgu133a.dbhgu133plus2.dbhttrIRangesiteratorsjsonliteKEGGdzPathwaysGEOKEGGRESTlatticelifecyclelimmamemoisemimenlmeopensslorg.Hs.eg.dbpkgconfigpngR6rlangrngtoolsRSQLiteS4VectorsSeqinfostatmodsysvctrsXVector

PADOG

Rendered fromPADOG.Rnwusingutils::Sweaveon May 29 2026.

Last update: 2023-11-04
Started: 2013-11-01