Package: PhyloProfileData 1.26.1

Vinh Tran

PhyloProfileData: Data package for phylogenetic profile analysis using PhyloProfile tool

Two experimental datasets to illustrate running and analysing phylogenetic profiles with PhyloProfile package.

Authors:Vinh Tran [aut, cre], Ingo Ebersberger [aut], Hannah Mülbaier [ctb], Arpit Jain [ctb]

PhyloProfileData_1.26.1.tar.gz
PhyloProfileData_1.26.1.tar.gz(r-4.7-any)PhyloProfileData_1.26.1.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PhyloProfileData/json (API)

# Install 'PhyloProfileData' in R:

install.packages('PhyloProfileData', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/trvinh/phyloprofiledata/issues

On BioConductor:PhyloProfileData-1.27.1(data/experiment 3.24)PhyloProfileData-1.26.1(data/experiment 3.23)

experimentdata reproducibleresearch experimenthub datapkg

4.18 score 2 scripts 0 exports 73 dependencies

Last updated from:cd383e1bef (on RELEASE_3_23). Checks:1 NOTE, 3 OK. Indexed: no.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time	Files	Syslog
bioc-checks	NOTE	144
linux-devel-x86_64	OK	213
source / vignettes	OK	217
linux-release-x86_64	OK	215

Exports:

Dependencies:AnnotationDbi AnnotationHub askpass base64enc Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocStyle BiocVersion Biostrings bit bit64 blob bookdown bslib cachem cli cpp11 crayon curl DBI dbplyr digest dplyr evaluate ExperimentHub fastmap filelock fontawesome fs generics glue highr htmltools httr httr2 IRanges jquerylib jsonlite KEGGREST knitr lifecycle magrittr memoise mime openssl pillar pkgconfig png purrr R6 rappdirs rlang rmarkdown RSQLite S4Vectors sass Seqinfo stringi stringr sys tibble tidyr tidyselect tinytex utf8 vctrs withr xfun XVector yaml

Overview of PhyloProfileData

Introduction | Phylogenetic profiles of AMPK-TOR pathway | Phylogenetic profiles of BUSCO Arthropoda proteins | SessionInfo() | References

Rendered fromPhyloProfileData.Rmdusingknitr::rmarkdown

Last update: 2025-06-25
Started: 2019-05-30

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Data package for phylogenetic profile analysis using PhyloProfile tool	PhyloProfileData-package PhyloProfileData

Usage by other packages (reverse dependencies)