Package: Statial 1.14.0

Farhan Ameen

Statial: A package to identify changes in cell state relative to spatial associations

Statial is a suite of functions for identifying changes in cell state. The functionality provided by Statial provides robust quantification of cell type localisation which are invariant to changes in tissue structure. In addition to this Statial uncovers changes in marker expression associated with varying levels of localisation. These features can be used to explore how the structure and function of different cell types may be altered by the agents they are surrounded with.

Authors:Farhan Ameen [aut, cre], Sourish Iyengar [aut], Alex Qin [aut], Shila Ghazanfar [aut], Ellis Patrick [aut]

Statial_1.14.0.tar.gz
Statial_1.14.0.zip(r-4.7)Statial_1.14.0.zip(r-4.6)Statial_1.14.0.zip(r-4.5)
Statial_1.14.0.tgz(r-4.6-any)Statial_1.14.0.tgz(r-4.5-any)
Statial_1.14.0.tar.gz(r-4.7-any)Statial_1.14.0.tar.gz(r-4.6-any)
Statial_1.14.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
Statial/json (API)

# Install 'Statial' in R:
install.packages('Statial', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sydneybiox/statial/issues

Pkgdown/docs site:https://sydneybiox.github.io

Datasets:

On BioConductor:Statial-1.15.0(bioc 3.24)Statial-1.14.0(bioc 3.23)

singlecellspatialclassificationsingle-cell

6.74 score 6 stars 29 scripts 402 downloads 16 exports 225 dependencies

Last updated from:f15705a083 (on RELEASE_3_23). Checks:1 WARNING, 5 ERROR, 2 OK, 2 NOTE. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksWARNING250
linux-devel-x86_64ERROR540
source / vignettesOK726
linux-release-x86_64ERROR442
macos-release-arm64NOTE487
macos-oldrel-arm64NOTE612
windows-develERROR1761
windows-releaseERROR859
windows-oldrelERROR894
wasm-releaseOK244

Exports:calcContaminationcalcStateChangesgetAbundancesgetDistancesgetMarkerMeansgetParentPhyloisKontextualkontextCurvekontextPlotKontextualmakeWindowparentCombinationsplotStateChangesprepMatrixrelabelrelabelKontextual

Dependencies:abindALLapeaplotaskpassbackportsbase64encBHBiobaseBiocFileCacheBiocGenericsbiocmakeBiocParallelbitbit64blobbootbroombslibcachemcarcarDatacirclizeclassclassIntcliclueclustercodetoolscolorRampscolorspaceComplexHeatmapconcavemanConsensusClusterPluscorrplotcowplotcpp11crayoncrosstalkcurlcytolibdata.tableDBIdbplyrDelayedArraydeldirDerivdiffcytdigestdir.expirydoBydoParalleldplyre1071edgeRevaluatefarverfastmapfilelockflowCoreFlowSOMfontawesomefontBitstreamVerafontLiberationfontquiverforeachforecastformatRFormulafracdifffsfutile.loggerfutile.optionsgdtoolsgenericsGenomicRangesGetoptLongggforceggfunggiraphggnewscaleggplot2ggplotifyggpubrggrepelggsciggsignifggtreeGlobalOptionsgluegoftestgridExtragridGraphicsgtablehighrhopachhtmltoolshtmlwidgetshttrhttr2igraphIRangesisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmalme4lmtestlocfitmagickmagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrmultcompmvtnormnlmenloptrnnetnumDerivopensslotelpatchworkpbkrtestpillarpkgconfigplotlyplyrpngpolyclippolynompromisesproxypurrrquantregR6rangerrappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasreshape2Rhdf5librjsonrlangrmarkdownRProtoBufLibRSQLiterstatixRtsnes2S4ArraysS4VectorsS7sandwichsassscalesSeqinfosfshapeSingleCellExperimentsnowSparseArraySparseMSpatialExperimentspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstatmodstringistringrSummarizedExperimentsurvivalsyssystemfontstensorTH.datatibbletidyrtidyselecttidytreetimeDatetinytextreeiotreekoRtweenrunitsurcautf8V8vctrsviridisLitewithrwkxfunXMLXVectoryamlyulab.utilszoo

Statial

Farhan Ameen, Sourish Iyengar, Alex Qin, Ellis Patrick

Rendered fromStatial.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2025-07-07
Started: 2022-09-18