Package: TENxVisiumData 1.20.0

Helena L. Crowell

TENxVisiumData: Visium spatial gene expression data by 10X Genomics

Collection of Visium spatial gene expression datasets by 10X Genomics, formatted into objects of class SpatialExperiment. Data cover various organisms and tissues, and include: single- and multi-section experiments, as well as single sections subjected to both whole transcriptome and targeted panel analysis. Datasets may be used for testing of and as examples in packages, for tutorials and workflow demonstrations, or similar purposes.

Authors:Helena L. Crowell [aut, cre]

TENxVisiumData_1.20.0.tar.gz
TENxVisiumData_1.20.0.tar.gz(r-4.7-any)TENxVisiumData_1.20.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
TENxVisiumData/json (API)

# Install 'TENxVisiumData' in R:

install.packages('TENxVisiumData', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/helenalc/tenxvisiumdata/issues

On BioConductor:TENxVisiumData-1.21.0(data/experiment 3.24)TENxVisiumData-1.20.0(data/experiment 3.23)

experimenthub expressiondata experimentdata homo_sapiens_data mus_musculus_data reproducibleresearch datapkg

5.35 score 8 stars 28 scripts 13 exports 72 dependencies

Last updated from:73ea8b6883 (on RELEASE_3_23). Checks:3 NOTE, 1 OK. Indexed: no.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	NOTE	165
linux-devel	NOTE	278
source / vignettes	OK	263
linux-release	NOTE	275

Exports:HumanBreastCancerIDC HumanBreastCancerILC HumanCerebellum HumanColorectalCancer HumanGlioblastoma HumanHeart HumanLymphNode HumanOvarianCancer HumanSpinalCord MouseBrainCoronal MouseBrainSagittalAnterior MouseBrainSagittalPosterior MouseKidneyCoronal

Dependencies:abind AnnotationDbi AnnotationHub askpass Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr DelayedArray dplyr ExperimentHub fastmap filelock generics GenomicRanges glue httr httr2 IRanges jsonlite KEGGREST lattice lifecycle magick magrittr Matrix MatrixGenerics matrixStats memoise mime openssl pillar pkgconfig png purrr R6 rappdirs Rcpp rjson rlang RSQLite S4Arrays S4Vectors Seqinfo SingleCellExperiment SparseArray SpatialExperiment stringi stringr SummarizedExperiment sys tibble tidyr tidyselect utf8 vctrs withr XVector yaml

TENxVisiumData

Available datasets | Loading the data | Data representation | Session information

Rendered fromvignette.Rmdusingknitr::rmarkdown

Last update: 2021-04-27
Started: 2020-12-19

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
TENxVisiumData	HumanBreastCancerIDC HumanBreastCancerILC HumanCerebellum HumanColorectalCancer HumanGlioblastoma HumanHeart HumanLymphNode HumanOvarianCancer HumanSpinalCord MouseBrainCoronal MouseBrainSagittalAnterior MouseBrainSagittalPosterior MouseKidneyCoronal TENxVisiumData