Package: ccdata 1.38.0
Alex Pickering
ccdata: Data for Combination Connectivity Mapping (ccmap) Package
This package contains microarray gene expression data generated from the Connectivity Map build 02 and LINCS l1000. The data are used by the ccmap package to find drugs and drug combinations to mimic or reverse a gene expression signature.
Authors:
ccdata_1.38.0.tar.gz
ccdata_1.38.0.tar.gz(r-4.7-any)ccdata_1.38.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
ccdata/json (API)
| # Install 'ccdata' in R: |
| install.packages('ccdata', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
- cmap_es - Effect size values for Connectivity Map build 02 drugs.
- cmap_var - Variance values for Connectivity Map build 02 drugs.
- genes - HGNC symbols used for NNet predictions.
- l1000_es - Effect size values for LINCS l1000 signatures.
- net1 - Neural network model 1 for treatment combinations.
- net2 - Neural network model 2 for treatment combinations.
- xgb_mod - XGBoost model for treatment combinations.
On BioConductor:ccdata-1.39.1(data/experiment 3.24)ccdata-1.38.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatamicroarraydataexpressiondatadatapkg
Last updated from:76401058fd (on RELEASE_3_23). Checks:1 ERROR, 2 WARNING, 1 OK. Indexed: no.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 184 | ||
| linux-devel | WARNING | 408 | ||
| source / vignettes | OK | 3592 | ||
| linux-release | WARNING | 378 |
Exports:
Dependencies:
