Package: crisprBowtie 1.16.0

Jean-Philippe Fortin

crisprBowtie: Bowtie-based alignment of CRISPR gRNA spacer sequences

Provides a user-friendly interface to map on-targets and off-targets of CRISPR gRNA spacer sequences using bowtie. The alignment is fast, and can be performed using either commonly-used or custom CRISPR nucleases. The alignment can work with any reference or custom genomes. Both DNA- and RNA-targeting nucleases are supported.

Authors:Jean-Philippe Fortin [aut, cre]

crisprBowtie_1.16.0.tar.gz
crisprBowtie_1.16.0.zip(r-4.7)crisprBowtie_1.16.0.zip(r-4.6)crisprBowtie_1.16.0.zip(r-4.5)
crisprBowtie_1.16.0.tgz(r-4.6-any)crisprBowtie_1.16.0.tgz(r-4.5-any)
crisprBowtie_1.16.0.tar.gz(r-4.7-any)crisprBowtie_1.16.0.tar.gz(r-4.6-any)
crisprBowtie_1.16.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
crisprBowtie/json (API)
NEWS

# Install 'crisprBowtie' in R:

install.packages('crisprBowtie', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/crisprverse/crisprbowtie/issues

On BioConductor:crisprBowtie-1.17.0(bioc 3.24)crisprBowtie-1.16.0(bioc 3.23)

crispr functionalgenomics alignment aligner bioconductor bioconductor-package bowtie crispr-analysis crispr-cas9 crispr-design crispr-target grna grna-sequence grna-sequences sgrna sgrna-design

6.03 score 3 stars 4 packages 9 scripts 420 downloads 2 exports 74 dependencies

Last updated from:2f215a5561 (on RELEASE_3_23). Checks:8 NOTE, 2 OK. Indexed: no.

Target	Result	Time
bioc-checks	NOTE	231
linux-devel-x86_64	NOTE	434
source / vignettes	OK	356
linux-release-x86_64	NOTE	455
macos-release-arm64	NOTE	303
macos-oldrel-arm64	NOTE	350
windows-devel	NOTE	328
windows-release	NOTE	322
windows-oldrel	NOTE	376
wasm-release	OK	185