Fluent genomics with plyranges and tximeta
Introduction | Experimental Data | Import Data as a SummarizedExperiment | Using tximeta to import RNA-seq quantification data | Importing ATAC-seq data as a SummarizedExperiment object | Model assays | RNA-seq differential gene expression analysis | ATAC-seq peak differential abundance analysis | Integrate ranges | Finding overlaps with plyranges | Down sampling non-differentially expressed genes | Expanding genomic coordinates around the transcription start site | Use overlap joins to find relative enrichment | Discussion | Software Availability | Session Info | Author Contributions | Competing interests | Funding | Acknowledgements | References