Package: hca 1.20.0
Martin Morgan
hca: Exploring the Human Cell Atlas Data Coordinating Platform
This package provides users with the ability to query the Human Cell Atlas data repository for single-cell experiment data. The `projects()`, `files()`, `samples()` and `bundles()` functions retrieve summary information on each of these indexes; corresponding `*_details()` are available for individual entries of each index. File-based resources can be downloaded using `files_download()`. Advanced use of the package allows the user to page through large result sets, and to flexibly query the 'list-of-lists' structure representing query responses.
Authors:
hca_1.20.0.tar.gz
hca_1.20.0.zip(r-4.7)hca_1.20.0.zip(r-4.6)hca_1.20.0.zip(r-4.5)
hca_1.20.0.tgz(r-4.6-any)hca_1.20.0.tgz(r-4.5-any)
hca_1.20.0.tar.gz(r-4.7-any)hca_1.20.0.tar.gz(r-4.6-any)
hca_1.20.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
hca/json (API)
NEWS
| # Install 'hca' in R: |
| install.packages('hca', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:cef52d8af9 (on RELEASE_3_23). Checks:1 WARNING, 8 ERROR, 1 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 168 | ||
| linux-devel-x86_64 | ERROR | 248 | ||
| source / vignettes | ERROR | 201 | ||
| linux-release-x86_64 | ERROR | 296 | ||
| macos-release-arm64 | ERROR | 152 | ||
| macos-oldrel-arm64 | ERROR | 160 | ||
| windows-devel | ERROR | 208 | ||
| windows-release | ERROR | 156 | ||
| windows-oldrel | ERROR | 156 | ||
| wasm-release | OK | 154 |
Exports:.hca_bind.is_catalog.is_character.is_character_0.is_scalar.is_scalar_character.is_scalar_integer.is_scalar_logical.is_scalar_numeric.is_vector_0bundlesbundles_default_columnsbundles_detailbundles_facetscatalogsfacet_optionsfilesfiles_cachefiles_default_columnsfiles_detailfiles_downloadfiles_facetsfiltershca_nexthca_prevhca_viewlollol_filterlol_hits_lpulllol_hits_pulllol_lpulllol_pathlol_pulllol_selectmanifestmanifest_cacheoptimus_loom_annotationproject_informationproject_titleprojectsprojects_default_columnsprojects_detailprojects_facetssamplessamples_default_columnssamples_detailsamples_facetssummary
Dependencies:askpassbase64encBiocFileCachebitbit64blobbslibcachemclicliprcommonmarkcpp11crayoncrosstalkcurlDBIdbplyrdigestdplyrDTevaluatefastmapfilelockfontawesomefsgenericsgluehighrhmshtmltoolshtmlwidgetshttpuvhttrhttr2jquerylibjsonliteknitrlaterlazyevallifecyclemagrittrmemoisemimeminiUIopensslotelpillarpkgconfigprettyunitsprogresspromisespurrrR6rappdirsRcppreadrrlangrmarkdownRSQLitesassshinysourcetoolsstringistringrsystibbletidyrtidyselecttinytextzdbutf8vctrsvroomwithrxfunxtableyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Single Entity Details | .details |
| HCA Bundle Querying | bundles bundles_default_columns bundles_detail bundles_facets |
| Catalogs Available in the HCA | catalogs |
| HCA File Querying | files files_cache files_default_columns files_detail files_download files_facets |
| HCA Filter Construction | facet_options filters length.filters print.filters |
| Page through HCA results | hca_next hca_prev |
| 'list' representation of HCA query results | hca_next.list_hca hca_prev.list_hca |
| 'tibble' representation of HCA query results | hca_next.tbl_hca hca_prev.tbl_hca |
| View and select table rows interactively | hca_view |
| Representing and manipulating list-of-list data structures. | as.list.lol hca_next.lol_hca hca_prev.lol_hca lol lol_filter lol_hits_lpull lol_hits_pull lol_lpull lol_path lol_pull lol_select print.lol |
| HCA File Querying | manifest manifest_cache |
| HCA loom file annotation | optimus_loom_annotation optimus_loom_annotation.character optimus_loom_annotation.LoomExperiment |
| Project Summaries from Project IDs | print.project_information project_information project_title |
| HCA Project Querying | projects projects_default_columns projects_detail projects_facets |
| HCA Sample Querying | samples samples_default_columns samples_detail samples_facets |
| Repository summary statistics | summary |
