Package: miRNAmeConverter 1.40.0

Stefan J. Haunsberger

miRNAmeConverter: Convert miRNA Names to Different miRBase Versions

Translating mature miRNA names to different miRBase versions, sequence retrieval, checking names for validity and detecting miRBase version of a given set of names (data from http://www.mirbase.org/).

Authors:Stefan Haunsberger [aut, cre]

miRNAmeConverter_1.40.0.tar.gz
miRNAmeConverter_1.40.0.zip(r-4.7)miRNAmeConverter_1.40.0.zip(r-4.6)miRNAmeConverter_1.40.0.zip(r-4.5)
miRNAmeConverter_1.40.0.tgz(r-4.6-any)miRNAmeConverter_1.40.0.tgz(r-4.5-any)
miRNAmeConverter_1.40.0.tar.gz(r-4.7-any)miRNAmeConverter_1.40.0.tar.gz(r-4.6-any)
miRNAmeConverter_1.40.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
miRNAmeConverter/json (API)
NEWS

# Install 'miRNAmeConverter' in R:

install.packages('miRNAmeConverter', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

example.miRNAs - MiRNA names.

On BioConductor:miRNAmeConverter-1.41.0(bioc 3.24)miRNAmeConverter-1.40.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

preprocessing mirna

3.78 score 7 scripts 326 downloads 6 mentions 12 exports 43 dependencies

Last updated from:d695617ce2 (on RELEASE_3_23). Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: no.

Target	Result	Time
bioc-checks	ERROR	157
linux-devel-x86_64	WARNING	264
source / vignettes	OK	208
linux-release-x86_64	WARNING	189
macos-release-arm64	WARNING	134
macos-oldrel-arm64	WARNING	143
windows-devel	WARNING	176
windows-release	WARNING	171
windows-oldrel	WARNING	155
wasm-release	OK	122

Exports:assessVersion checkMiRNAName currentVersion getMirnasForMirbaseVersion MiRNANameConverter nOrganisms nTotalEntries saveResults show translateMiRNAName validOrganisms validVersions

Dependencies:AnnotationDbi askpass Biobase BiocGenerics Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI fastmap generics glue gtools httr IRanges jsonlite KEGGREST lifecycle magrittr memoise mime miRBaseVersions.db openssl pkgconfig plyr png R6 Rcpp reshape2 rlang RSQLite S4Vectors Seqinfo stringi stringr sys vctrs XVector

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Check if given miRNA names can be assigned to unique MIMAT accessions among all versions	assessMiRNASwappingMIMAT
Assess miRBase version	assessVersion assessVersion,MiRNANameConverter-method
Check miRNA names for validity	checkMiRNAName checkMiRNAName,MiRNANameConverter-method
Get current version	currentVersion currentVersion,MiRNANameConverter-method
Set current version	currentVersion<-
miRNA names.	example.miRNAs
MiRNANameConverter constructor	miRNAmeConverter-package miRNAmeConverter
Instantiate from MiRNANameConverter class	MiRNANameConverter
MiRNANameConverter constructor	MiRNANameConverter,ANY-method
Get number of organisms	nOrganisms nOrganisms,MiRNANameConverter-method
Set number of organisms	nOrganisms<-
Get total number database entries	nTotalEntries nTotalEntries,MiRNANameConverter-method
Set total number database entries	nTotalEntries<-
Save miRNA translation results	saveResults saveResults,MiRNANameConverter,data.frame-method
Show-method	show,MiRNANameConverter-method
Translate miRNA name	translateMiRNAName translateMiRNAName,MiRNANameConverter,character-method
Get valid organisms	validOrganisms validOrganisms,MiRNANameConverter-method
Set valid organisms	validOrganisms<-
Get valid versions	validVersions validVersions,MiRNANameConverter-method
Set valid versions	validVersions<-