Package: pathRender 1.80.0
Vince Carey
pathRender: Render molecular pathways
build graphs from pathway databases, render them by Rgraphviz.
Authors:
pathRender_1.80.0.tar.gz
pathRender_1.80.0.zip(r-4.7)pathRender_1.80.0.zip(r-4.6)pathRender_1.80.0.zip(r-4.5)
pathRender_1.80.0.tgz(r-4.6-any)pathRender_1.80.0.tgz(r-4.5-any)
pathRender_1.80.0.tar.gz(r-4.7-any)pathRender_1.80.0.tar.gz(r-4.6-any)
pathRender_1.80.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
pathRender/json (API)
NEWS
| # Install 'pathRender' in R: |
| install.packages('pathRender', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:pathRender-1.81.1(bioc 3.24)pathRender-1.80.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
graphandnetworkpathwaysvisualization
Last updated from:5229ebd695 (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 191 | ||
| linux-devel-x86_64 | NOTE | 262 | ||
| source / vignettes | OK | 282 | ||
| linux-release-x86_64 | NOTE | 206 | ||
| macos-release-arm64 | NOTE | 208 | ||
| macos-oldrel-arm64 | NOTE | 171 | ||
| windows-devel | NOTE | 165 | ||
| windows-release | NOTE | 155 | ||
| windows-oldrel | NOTE | 166 | ||
| wasm-release | OK | 142 |
Exports:colorNodesgraphcMAPplotplotExGraphpwayRendAttrsreduceESrendercMAPPathway
Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicMAPcpp11crayoncurlDBIfastmapgenericsgluegraphhttrIRangesjsonliteKEGGRESTlifecyclememoisemimeopensslpkgconfigpngR6RColorBrewerRgraphvizrlangRSQLiteS4VectorsSeqinfosysvctrsXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Class "coloredGraph" | coloredGraph-class plot,coloredGraph,ANY-method pwayRendAttrs |
| attach node coloring information to a graphNEL instance | colorNodes colorNodes,graphNEL,numeric,character,function-method |
| obtain a graph object corresponding to a cMAP pathway | graphcMAP |
| plot a gene network, coloring nodes according to relative expression values | plotExGraph |
| Class "pwayGraph" - extension to graphNEL for pathway rendering | plot,pwayGraph,ANY-method pwayGraph-class |
| collapse the assay values in an ExpressionSet to a set of specified genes, using a statistic when multiple probes map to a given gene | reduceES |
| Render pathways from cMAP | rendercMAPPathway |
