Package: proBAMr 1.46.0

Xiaojing Wang

proBAMr: Generating SAM file for PSMs in shotgun proteomics data

Mapping PSMs back to genome. The package builds SAM file from shotgun proteomics data The package also provides function to prepare annotation from GTF file.

Authors:Xiaojing Wang

proBAMr_1.46.0.tar.gz
proBAMr_1.46.0.zip(r-4.7)proBAMr_1.46.0.zip(r-4.6)proBAMr_1.46.0.zip(r-4.5)
proBAMr_1.46.0.tgz(r-4.6-any)proBAMr_1.46.0.tgz(r-4.5-any)
proBAMr_1.46.0.tar.gz(r-4.7-any)proBAMr_1.46.0.tar.gz(r-4.6-any)
proBAMr_1.46.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
proBAMr/json (API)
NEWS

# Install 'proBAMr' in R:
install.packages('proBAMr', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:proBAMr-1.47.0(bioc 3.24)proBAMr-1.46.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologyproteomicsmassspectrometrysoftwarevisualization

3.30 score 1 scripts 342 downloads 1 mentions 2 exports 90 dependencies

Last updated from:3363cd6c57 (on RELEASE_3_23). Checks:1 ERROR, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR198
linux-devel-x86_64OK390
source / vignettesOK273
linux-release-x86_64OK422
macos-release-arm64OK231
macos-oldrel-arm64OK307
windows-develOK336
windows-releaseOK386
windows-oldrelOK312
wasm-releaseOK147

Exports:PrepareAnnotationGENCODEPSMtab2SAM

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocParallelbiomaRtBiostringsbitbit64bitopsblobcachemcigarilloclicodetoolscpp11crayoncurlDBIdbplyrDelayedArraydplyrfastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesgluehmshttrhttr2IRangesjsonliteKEGGRESTlambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigpngprettyunitsprogresspurrrR6rappdirsRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsSeqinfosnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttxdbmakerUCSC.utilsutf8vctrswithrXMLxml2XVectoryaml

Introduction to proBAMr

Rendered fromproBAMr.Rnwusingutils::Sweaveon Jun 03 2026.

Last update: 2015-01-02
Started: 2014-10-03