Package: receptLoss 1.24.0

Daniel Pique

receptLoss: Unsupervised Identification of Genes with Expression Loss in Subsets of Tumors

receptLoss identifies genes whose expression is lost in subsets of tumors relative to normal tissue. It is particularly well-suited in cases where the number of normal tissue samples is small, as the distribution of gene expression in normal tissue samples is approximated by a Gaussian. Originally designed for identifying nuclear hormone receptor expression loss but can be applied transcriptome wide as well.

Authors:Daniel Pique, John Greally, Jessica Mar

receptLoss_1.24.0.tar.gz
receptLoss_1.24.0.zip(r-4.7-any)receptLoss_1.24.0.zip(r-4.6-any)receptLoss_1.24.0.zip(r-4.5-any)
receptLoss_1.24.0.tgz(r-4.6-any)receptLoss_1.24.0.tgz(r-4.5-any)
receptLoss_1.24.0.tar.gz(r-4.7-any)receptLoss_1.24.0.tar.gz(r-4.6-any)
receptLoss_1.24.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
receptLoss/json (API)

# Install 'receptLoss' in R:

install.packages('receptLoss', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

nhrs - Table of Nuclear Hormone Receptors

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneexpression statisticalmethod

3.18 score 4 scripts 251 downloads 1 mentions 3 exports 45 dependencies

Last updated from:08b1730596 (on RELEASE_3_23). Checks:8 ERROR, 2 OK. Indexed: no.

Target	Result	Time
bioc-checks	ERROR	161
linux-devel	ERROR	379
source / vignettes	OK	239
linux-release	ERROR	285
macos-release	ERROR	224
macos-oldrel	ERROR	196
windows-devel	ERROR	191
windows-release	ERROR	186
windows-oldrel	ERROR	185
wasm-release	OK	103

Exports:plotReceptLoss receptLoss toMatrix

Dependencies:abind Biobase BiocGenerics cli cpp11 DelayedArray dplyr farver generics GenomicRanges ggplot2 glue gtable IRanges isoband labeling lattice lifecycle magrittr Matrix MatrixGenerics matrixStats pillar pkgconfig purrr R6 RColorBrewer rlang S4Arrays S4Vectors S7 scales Seqinfo SparseArray stringi stringr SummarizedExperiment tibble tidyr tidyselect utf8 vctrs viridisLite withr XVector

receptLoss

Rendered fromreceptLoss.Rmdusingknitr::rmarkdown

Last update: 2020-04-17
Started: 2018-05-20

Help page	Topics
Table of Nuclear Hormone Receptors (NHRs)	nhrs
Plot histogram of genes with expression loss	plotReceptLoss
Identify genes with expression loss	receptLoss

Package: receptLoss 1.24.0

receptLoss: Unsupervised Identification of Genes with Expression Loss in Subsets of Tumors

Citation

Development and contributors

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)