Package: snifter 1.22.0
snifter: R wrapper for the python openTSNE library
Provides an R wrapper for the implementation of FI-tSNE from the python package openTNSE. See Poličar et al. (2019) <doi:10.1101/731877> and the algorithm described by Linderman et al. (2018) <doi:10.1038/s41592-018-0308-4>.
Authors:
snifter_1.22.0.tar.gz
snifter_1.22.0.zip(r-4.7)snifter_1.22.0.zip(r-4.6)snifter_1.22.0.zip(r-4.5)
snifter_1.22.0.tgz(r-4.6-any)snifter_1.22.0.tgz(r-4.5-any)
snifter_1.22.0.tar.gz(r-4.7-any)snifter_1.22.0.tar.gz(r-4.6-any)
snifter_1.22.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
snifter/json (API)
NEWS
| # Install 'snifter' in R: |
| install.packages('snifter', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/alanocallaghan/snifter/issues
On BioConductor:snifter-1.23.0(bioc 3.24)snifter-1.22.0(bioc 3.23)
dimensionreductionvisualizationsoftwaresinglecellsequencing
Last updated from:4e3b6e7830 (on RELEASE_3_23). Checks:8 NOTE, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 164 | ||
| linux-devel-x86_64 | NOTE | 1068 | ||
| source / vignettes | OK | 1006 | ||
| linux-release-x86_64 | NOTE | 1032 | ||
| macos-release-arm64 | NOTE | 520 | ||
| macos-oldrel-arm64 | NOTE | 475 | ||
| windows-devel | NOTE | 237 | ||
| windows-release | NOTE | 265 | ||
| windows-oldrel | NOTE | 262 | ||
| wasm-release | OK | 109 |
Dependencies:assertthatbasiliskdir.expiryfilelockhereirlbajsonlitelatticeMatrixpngrappdirsRcppRcppTOMLreticulaterlangrprojrootwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Project new data into an existing t-SNE embedding object. | project |
| snifter: fast interpolated t-SNE in R | fitsne snifter |
