Package: snifter 1.22.0

Alan OCallaghan

snifter: R wrapper for the python openTSNE library

Provides an R wrapper for the implementation of FI-tSNE from the python package openTNSE. See Poličar et al. (2019) <doi:10.1101/731877> and the algorithm described by Linderman et al. (2018) <doi:10.1038/s41592-018-0308-4>.

Authors:Alan O'Callaghan [aut, cre], Aaron Lun [aut]

snifter_1.22.0.tar.gz
snifter_1.22.0.zip(r-4.7)snifter_1.22.0.zip(r-4.6)snifter_1.22.0.zip(r-4.5)
snifter_1.22.0.tgz(r-4.6-any)snifter_1.22.0.tgz(r-4.5-any)
snifter_1.22.0.tar.gz(r-4.7-any)snifter_1.22.0.tar.gz(r-4.6-any)
snifter_1.22.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
snifter/json (API)
NEWS

# Install 'snifter' in R:
install.packages('snifter', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/alanocallaghan/snifter/issues

On BioConductor:snifter-1.23.0(bioc 3.24)snifter-1.22.0(bioc 3.23)

dimensionreductionvisualizationsoftwaresinglecellsequencing

5.26 score 3 stars 8 scripts 2 exports 17 dependencies

Last updated from:4e3b6e7830 (on RELEASE_3_23). Checks:8 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE164
linux-devel-x86_64NOTE1068
source / vignettesOK1006
linux-release-x86_64NOTE1032
macos-release-arm64NOTE520
macos-oldrel-arm64NOTE475
windows-develNOTE237
windows-releaseNOTE265
windows-oldrelNOTE262
wasm-releaseOK109

Exports:fitsneproject

Dependencies:assertthatbasiliskdir.expiryfilelockhereirlbajsonlitelatticeMatrixpngrappdirsRcppRcppTOMLreticulaterlangrprojrootwithr

Introduction to snifter

Rendered fromsnifter.Rmdusingknitr::rmarkdownon Jun 21 2026.

Last update: 2023-09-03
Started: 2020-07-17