Package: tanggle 1.18.0

Klaus Schliep

tanggle: Visualization of Phylogenetic Networks

Offers functions for plotting split (or implicit) networks (unrooted, undirected) and explicit networks (rooted, directed) with reticulations extending. 'ggtree' and using functions from 'ape' and 'phangorn'. It extends the 'ggtree' package [@Yu2017] to allow the visualization of phylogenetic networks using the 'ggplot2' syntax. It offers an alternative to the plot functions already available in 'ape' Paradis and Schliep (2019) <doi:10.1093/bioinformatics/bty633> and 'phangorn' Schliep (2011) <doi:10.1093/bioinformatics/btq706>.

Authors:Klaus Schliep [aut, cre], Marta Vidal-Garcia [aut], Claudia Solis-Lemus [aut], Leann Biancani [aut], Eren Ada [aut], L. Francisco Henao Diaz [aut], Guangchuang Yu [ctb], Joshua Justison [aut]

tanggle_1.18.0.tar.gz
tanggle_1.18.0.zip(r-4.7-any)tanggle_1.18.0.zip(r-4.6-any)tanggle_1.18.0.zip(r-4.5-any)
tanggle_1.18.0.tgz(r-4.6-any)tanggle_1.18.0.tgz(r-4.5-any)
tanggle_1.18.0.tar.gz(r-4.7-any)tanggle_1.18.0.tar.gz(r-4.6-any)
tanggle_1.18.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
tanggle/json (API)

# Install 'tanggle' in R:
install.packages('tanggle', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/klausvigo/tanggle/issues

Pkgdown/docs site:https://klausvigo.github.io

On BioConductor:tanggle-1.19.2(bioc 3.24)tanggle-1.18.0(bioc 3.23)

softwarevisualizationphylogeneticsalignmentclusteringmultiplesequencealignmentdataimportphylogenetic-networks

7.40 score 12 stars 70 scripts 6 exports 77 dependencies

Last updated from:057845ac6d (on RELEASE_3_23). Checks:1 NOTE, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE182
linux-devel-x86_64OK207
source / vignettesOK232
linux-release-x86_64OK239
macos-release-arm64OK97
macos-oldrel-arm64OK228
windows-develOK109
windows-releaseOK106
windows-oldrelOK104
wasm-releaseOK158

Exports:geom_splitnetggevonetggsplitnetminimize_overlapnode_depth_evonetswap_hybrid_minor

Dependencies:apeaplotbase64encbslibcachemclicpp11digestdplyrevaluatefarverfastmapfastmatchfontawesomefontBitstreamVerafontLiberationfontquiverfsgdtoolsgenericsggfunggiraphggplot2ggplotifyggtreegluegridGraphicsgtablehighrhtmltoolshtmlwidgetsigraphisobandjquerylibjsonliteknitrlabelinglatticelazyevallifecyclemagrittrMASSMatrixmemoisemimenlmepatchworkphangornpillarpkgconfigpurrrquadprogR6rappdirsRColorBrewerRcpprlangrmarkdownS7sassscalesstringistringrsystemfontstibbletidyrtidyselecttidytreetinytextreeioutf8vctrsviridisLitewithrxfunyamlyulab.utils

tanggle: Visualización de redes filogenéticas con ggplot2
Introducción | Lista de funciones | Para empezar | Redes dividida o implicitas | Tipos de datos | Para graficar una Red Dividida | Para graficar una Red Explícita | Resumen | Session info | References
Rendered fromtanggle_vignette_espanol.Rmdusingknitr::rmarkdown

Last update: 2025-07-11
Started: 2022-01-13

tanggle: Visualization of phylogenetic networks in a ggplot2 framework
Introduction | List of functions | Getting started | Split Networks | Data Types | Plotting a Split Network: | Plotting Explicit Networks | Summary | Session info | References
Rendered fromtanggle_vignette.Rmdusingknitr::rmarkdown

Last update: 2025-07-11
Started: 2020-11-07