Package: tanggle 1.18.0

Klaus Schliep

tanggle: Visualization of Phylogenetic Networks

Offers functions for plotting split (or implicit) networks (unrooted, undirected) and explicit networks (rooted, directed) with reticulations extending. 'ggtree' and using functions from 'ape' and 'phangorn'. It extends the 'ggtree' package [@Yu2017] to allow the visualization of phylogenetic networks using the 'ggplot2' syntax. It offers an alternative to the plot functions already available in 'ape' Paradis and Schliep (2019) <doi:10.1093/bioinformatics/bty633> and 'phangorn' Schliep (2011) <doi:10.1093/bioinformatics/btq706>.

Authors:Klaus Schliep [aut, cre], Marta Vidal-Garcia [aut], Claudia Solis-Lemus [aut], Leann Biancani [aut], Eren Ada [aut], L. Francisco Henao Diaz [aut], Guangchuang Yu [ctb], Joshua Justison [aut]

tanggle_1.18.0.tar.gz
tanggle_1.18.0.zip(r-4.7-any)tanggle_1.18.0.zip(r-4.6-any)tanggle_1.18.0.zip(r-4.5-any)
tanggle_1.18.0.tgz(r-4.6-any)tanggle_1.18.0.tgz(r-4.5-any)
tanggle_1.18.0.tar.gz(r-4.7-any)tanggle_1.18.0.tar.gz(r-4.6-any)
tanggle_1.18.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
tanggle/json (API)

# Install 'tanggle' in R:
install.packages('tanggle', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/klausvigo/tanggle/issues

Pkgdown/docs site:https://klausvigo.github.io

On BioConductor:tanggle-1.19.2(bioc 3.24)tanggle-1.18.0(bioc 3.23)

softwarevisualizationphylogeneticsalignmentclusteringmultiplesequencealignmentdataimportphylogenetic-networks

7.23 score 12 stars 71 scripts 412 downloads 6 exports 77 dependencies

Last updated from:057845ac6d (on RELEASE_3_23). Checks:1 NOTE, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE155
linux-develOK248
source / vignettesOK210
linux-releaseOK183
macos-releaseOK117
macos-oldrelOK110
windows-develOK100
windows-releaseOK103
windows-oldrelOK74
wasm-releaseOK115

Exports:geom_splitnetggevonetggsplitnetminimize_overlapnode_depth_evonetswap_hybrid_minor

Dependencies:apeaplotbase64encbslibcachemclicpp11digestdplyrevaluatefarverfastmapfastmatchfontawesomefontBitstreamVerafontLiberationfontquiverfsgdtoolsgenericsggfunggiraphggplot2ggplotifyggtreegluegridGraphicsgtablehighrhtmltoolshtmlwidgetsigraphisobandjquerylibjsonliteknitrlabelinglatticelazyevallifecyclemagrittrMASSMatrixmemoisemimenlmepatchworkphangornpillarpkgconfigpurrrquadprogR6rappdirsRColorBrewerRcpprlangrmarkdownS7sassscalesstringistringrsystemfontstibbletidyrtidyselecttidytreetinytextreeioutf8vctrsviridisLitewithrxfunyamlyulab.utils

tanggle: Visualización de redes filogenéticas con ggplot2
Introducción | Lista de funciones | Para empezar | Redes dividida o implicitas | Tipos de datos | Para graficar una Red Dividida | Para graficar una Red Explícita | Resumen | Session info | References
Rendered fromtanggle_vignette_espanol.Rmdusingknitr::rmarkdown

Last update: 2025-07-11
Started: 2022-01-13

tanggle: Visualization of phylogenetic networks in a ggplot2 framework
Introduction | List of functions | Getting started | Split Networks | Data Types | Plotting a Split Network: | Plotting Explicit Networks | Summary | Session info | References
Rendered fromtanggle_vignette.Rmdusingknitr::rmarkdown

Last update: 2025-07-11
Started: 2020-11-07