Package: tximeta 1.30.0

Michael Love

tximeta: Transcript Quantification Import with Automatic Metadata

Transcript quantification import from Salmon and other quantifiers with automatic attachment of transcript ranges and release information, and other associated metadata. De novo transcriptomes can be linked to the appropriate sources with linkedTxomes and shared for computational reproducibility.

Authors:Michael Love [aut, cre], Charlotte Soneson [aut, ctb], Peter Hickey [aut, ctb], Rob Patro [aut, ctb], NIH NHGRI [fnd], CZI [fnd]

tximeta_1.30.0.tar.gz
tximeta_1.30.0.zip(r-4.7)tximeta_1.30.0.zip(r-4.6)tximeta_1.30.0.zip(r-4.5)
tximeta_1.30.0.tgz(r-4.6-any)tximeta_1.30.0.tgz(r-4.5-any)
tximeta_1.30.0.tar.gz(r-4.7-any)tximeta_1.30.0.tar.gz(r-4.6-any)
tximeta_1.30.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
tximeta/json (API)
NEWS

# Install 'tximeta' in R:
install.packages('tximeta', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/thelovelab/tximeta/issues

On BioConductor:tximeta-1.31.0(bioc 3.24)tximeta-1.30.0(bioc 3.23)

annotationgenomeannotationdataimportpreprocessingrnaseqlongreadsinglecelltranscriptomicstranscriptiongeneexpressionfunctionalgenomicsreproducibleresearchreportwritingimmunooncology

11.23 score 72 stars 1 packages 552 scripts 2.8k downloads 11 mentions 17 exports 99 dependencies

Last updated from:fe803f9270 (on RELEASE_3_23). Checks:1 ERROR, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR265
linux-devel-x86_64OK703
source / vignettesOK498
linux-release-x86_64OK637
macos-release-arm64OK357
macos-oldrel-arm64OK560
windows-develOK582
windows-releaseOK618
windows-oldrelOK580
wasm-releaseOK207

Exports:addCDSaddExonsaddIdsgetTximetaBFCimportDatainspectDigestsloadLinkedTxomemakeDGEListmakeLinkedTxomemakeLinkedTxpDataretrieveCDNAretrieveDbsetTximetaBFCsplitSEsummarizeToGenetximetaupdateMetadata

Dependencies:abindAnnotationDbiAnnotationFilterAnnotationHubaskpassBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionbiomaRtBiostringsbitbit64bitopsblobcachemcigarilloclicodetoolscpp11crayoncurlDBIdbplyrDelayedArraydplyrensembldbfastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesgluehmshttrhttr2IRangesjsonliteKEGGRESTlambda.rlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigpngprettyunitsprogressProtGenericspurrrR6rappdirsRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsSeqinfosnowSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttxdbmakertximportUCSC.utilsutf8vctrswithrXMLxml2XVectoryaml

tximeta: transcript quantification import with automatic metadata

Michael I. Love, Charlotte Soneson, Peter F. Hickey, Rob Patro

Rendered fromtximeta.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2026-04-16
Started: 2018-07-12